Uses of Class
loci.formats.FormatException

Packages that use FormatException
loci.formats Bio-Formats: a library for reading and writing popular microscopy file formats. 
loci.formats.codec   
loci.formats.in   
loci.formats.out   
 

Uses of FormatException in loci.formats
 

Methods in loci.formats that throw FormatException
 void ClassList.addClass(Class c)
          Adds the given class, which must be assignable to the base class, to the list.
 void ClassList.addClass(Class c)
          Adds the given class, which must be assignable to the base class, to the list.
 boolean FormatWriter.canDoStacks(String id)
          Deprecated. Replaced by FormatWriter.canDoStacks()
 boolean IFormatWriter.canDoStacks(String id)
          Deprecated. Replaced by IFormatWriter.canDoStacks()
 boolean ImageWriter.canDoStacks(String id)
          Deprecated. Replaced by ImageWriter.canDoStacks()
 boolean FormatWriter.canDoStacks(String id)
          Deprecated. Replaced by FormatWriter.canDoStacks()
 boolean IFormatWriter.canDoStacks(String id)
          Deprecated. Replaced by IFormatWriter.canDoStacks()
 boolean ImageWriter.canDoStacks(String id)
          Deprecated. Replaced by ImageWriter.canDoStacks()
static void FormatTools.checkBufferSize(IFormatReader r, int len)
           
static void FormatTools.checkBufferSize(IFormatReader r, int len)
           
static void FormatTools.checkPlaneNumber(IFormatReader r, int no)
          Checks that the given plane number is valid for the given reader.
static void FormatTools.checkPlaneNumber(IFormatReader r, int no)
          Checks that the given plane number is valid for the given reader.
static byte[] TiffTools.compress(byte[] input, int compression)
          Encodes a strip of data with the given compression scheme.
static byte[] TiffTools.compress(byte[] input, int compression)
          Encodes a strip of data with the given compression scheme.
protected  void FileStitcher.computeAxisLengths()
          Computes axis length arrays, and total axis lengths.
protected  void FileStitcher.computeAxisLengths()
          Computes axis length arrays, and total axis lengths.
protected  int[] FileStitcher.computeIndices(int no)
          Gets the file index, and image index into that file, corresponding to the given global image index.
protected  int[] FileStitcher.computeIndices(int no)
          Gets the file index, and image index into that file, corresponding to the given global image index.
static void TiffTools.difference(byte[] input, int[] bitsPerSample, long width, int planarConfig, int predictor)
          Performs in-place differencing according to the given predictor value.
static void TiffTools.difference(byte[] input, int[] bitsPerSample, long width, int planarConfig, int predictor)
          Performs in-place differencing according to the given predictor value.
 int FileStitcher.fileGroupOption(String id)
           
 int FormatReader.fileGroupOption(String id)
           
 int IFormatReader.fileGroupOption(String id)
          Returns an int indicating that we cannot, must, or might group the files in a given dataset.
 int ImageReader.fileGroupOption(String id)
           
 int ReaderWrapper.fileGroupOption(String id)
           
 int FileStitcher.fileGroupOption(String id)
           
 int FormatReader.fileGroupOption(String id)
           
 int IFormatReader.fileGroupOption(String id)
          Returns an int indicating that we cannot, must, or might group the files in a given dataset.
 int ImageReader.fileGroupOption(String id)
           
 int ReaderWrapper.fileGroupOption(String id)
           
 short[][] FileStitcher.get16BitLookupTable()
           
 short[][] FormatReader.get16BitLookupTable()
           
 short[][] IFormatReader.get16BitLookupTable()
          Gets the 16-bit color lookup table associated with the most recently opened image.
 short[][] ImageReader.get16BitLookupTable()
           
 short[][] ReaderWrapper.get16BitLookupTable()
           
 short[][] FileStitcher.get16BitLookupTable()
           
 short[][] FormatReader.get16BitLookupTable()
           
 short[][] IFormatReader.get16BitLookupTable()
          Gets the 16-bit color lookup table associated with the most recently opened image.
 short[][] ImageReader.get16BitLookupTable()
           
 short[][] ReaderWrapper.get16BitLookupTable()
           
 byte[][] FileStitcher.get8BitLookupTable()
           
 byte[][] FormatReader.get8BitLookupTable()
           
 byte[][] IFormatReader.get8BitLookupTable()
          Gets the 8-bit color lookup table associated with the most recently opened image.
 byte[][] ImageReader.get8BitLookupTable()
           
 byte[][] ReaderWrapper.get8BitLookupTable()
           
 byte[][] FileStitcher.get8BitLookupTable()
           
 byte[][] FormatReader.get8BitLookupTable()
           
 byte[][] IFormatReader.get8BitLookupTable()
          Gets the 8-bit color lookup table associated with the most recently opened image.
 byte[][] ImageReader.get8BitLookupTable()
           
 byte[][] ReaderWrapper.get8BitLookupTable()
           
 AxisGuesser FileStitcher.getAxisGuesser(String id)
          Deprecated. Replaced by FileStitcher.getAxisGuesser()
 AxisGuesser FileStitcher.getAxisGuesser(String id)
          Deprecated. Replaced by FileStitcher.getAxisGuesser()
 int[] FileStitcher.getAxisTypes(String id)
          Deprecated. Replaced by FileStitcher.getAxisTypes()
 int[] FileStitcher.getAxisTypes(String id)
          Deprecated. Replaced by FileStitcher.getAxisTypes()
static int[] TiffTools.getBitsPerSample(Hashtable ifd)
          Retrieves the image's bits per sample (TIFF tag BitsPerSample) from a given TIFF IFD.
static int[] TiffTools.getBitsPerSample(Hashtable ifd)
          Retrieves the image's bits per sample (TIFF tag BitsPerSample) from a given TIFF IFD.
 int[] FileStitcher.getChannelDimLengths(String id)
          Deprecated. Replaced by FileStitcher.getChannelDimLengths()
 int[] FormatReader.getChannelDimLengths(String id)
          Deprecated. Replaced by FormatReader.getChannelDimLengths()
 int[] IFormatReader.getChannelDimLengths(String id)
          Deprecated. Replaced by IFormatReader.getChannelDimLengths()
 int[] ImageReader.getChannelDimLengths(String id)
          Deprecated. Replaced by ImageReader.getChannelDimLengths()
 int[] ReaderWrapper.getChannelDimLengths(String id)
          Deprecated. Replaced by IFormatReader#getChannelDimLengths()
 int[] FileStitcher.getChannelDimLengths(String id)
          Deprecated. Replaced by FileStitcher.getChannelDimLengths()
 int[] FormatReader.getChannelDimLengths(String id)
          Deprecated. Replaced by FormatReader.getChannelDimLengths()
 int[] IFormatReader.getChannelDimLengths(String id)
          Deprecated. Replaced by IFormatReader.getChannelDimLengths()
 int[] ImageReader.getChannelDimLengths(String id)
          Deprecated. Replaced by ImageReader.getChannelDimLengths()
 int[] ReaderWrapper.getChannelDimLengths(String id)
          Deprecated. Replaced by IFormatReader#getChannelDimLengths()
 String[] FileStitcher.getChannelDimTypes(String id)
          Deprecated. Replaced by FileStitcher.getChannelDimTypes()
 String[] FormatReader.getChannelDimTypes(String id)
          Deprecated. Replaced by FormatReader.getChannelDimTypes()
 String[] IFormatReader.getChannelDimTypes(String id)
          Deprecated. Replaced by IFormatReader.getChannelDimTypes()
 String[] ImageReader.getChannelDimTypes(String id)
          Deprecated. Replaced by ImageReader.getChannelDimTypes()
 String[] ReaderWrapper.getChannelDimTypes(String id)
          Deprecated. Replaced by IFormatReader#getChannelDimTypes()
 String[] FileStitcher.getChannelDimTypes(String id)
          Deprecated. Replaced by FileStitcher.getChannelDimTypes()
 String[] FormatReader.getChannelDimTypes(String id)
          Deprecated. Replaced by FormatReader.getChannelDimTypes()
 String[] IFormatReader.getChannelDimTypes(String id)
          Deprecated. Replaced by IFormatReader.getChannelDimTypes()
 String[] ImageReader.getChannelDimTypes(String id)
          Deprecated. Replaced by ImageReader.getChannelDimTypes()
 String[] ReaderWrapper.getChannelDimTypes(String id)
          Deprecated. Replaced by IFormatReader#getChannelDimTypes()
 Double MinMaxCalculator.getChannelGlobalMaximum(int theC)
          Retrieves a specified channel's global maximum.
 Double MinMaxCalculator.getChannelGlobalMaximum(int theC)
          Retrieves a specified channel's global maximum.
 Double MinMaxCalculator.getChannelGlobalMinimum(int theC)
          Retrieves a specified channel's global minimum.
 Double MinMaxCalculator.getChannelGlobalMinimum(int theC)
          Retrieves a specified channel's global minimum.
 Double MinMaxCalculator.getChannelKnownMaximum(int theC)
          Retrieves the specified channel's maximum based on the images that have been read.
 Double MinMaxCalculator.getChannelKnownMaximum(int theC)
          Retrieves the specified channel's maximum based on the images that have been read.
 Double MinMaxCalculator.getChannelKnownMinimum(int theC)
          Retrieves the specified channel's minimum based on the images that have been read.
 Double MinMaxCalculator.getChannelKnownMinimum(int theC)
          Retrieves the specified channel's minimum based on the images that have been read.
static String TiffTools.getComment(String id)
          Convenience method for obtaining a file's first ImageDescription.
static String TiffTools.getComment(String id)
          Convenience method for obtaining a file's first ImageDescription.
static int TiffTools.getCompression(Hashtable ifd)
          Retrieves the image's compression type (TIFF tag Compression) from a given TIFF IFD.
static int TiffTools.getCompression(Hashtable ifd)
          Retrieves the image's compression type (TIFF tag Compression) from a given TIFF IFD.
 CoreMetadata FileStitcher.getCoreMetadata(String id)
          Deprecated. Replaced by FileStitcher.getCoreMetadata()
 CoreMetadata FormatReader.getCoreMetadata(String id)
          Deprecated. Replaced by FormatReader.getCoreMetadata()
 CoreMetadata IFormatReader.getCoreMetadata(String id)
          Deprecated. Replaced by IFormatReader.getCoreMetadata()
 CoreMetadata ImageReader.getCoreMetadata(String id)
          Deprecated. Replaced by ImageReader.getCoreMetadata()
 CoreMetadata ReaderWrapper.getCoreMetadata(String id)
          Deprecated. Replaced by IFormatReader#getCoreMetadata()
 CoreMetadata FileStitcher.getCoreMetadata(String id)
          Deprecated. Replaced by FileStitcher.getCoreMetadata()
 CoreMetadata FormatReader.getCoreMetadata(String id)
          Deprecated. Replaced by FormatReader.getCoreMetadata()
 CoreMetadata IFormatReader.getCoreMetadata(String id)
          Deprecated. Replaced by IFormatReader.getCoreMetadata()
 CoreMetadata ImageReader.getCoreMetadata(String id)
          Deprecated. Replaced by ImageReader.getCoreMetadata()
 CoreMetadata ReaderWrapper.getCoreMetadata(String id)
          Deprecated. Replaced by IFormatReader#getCoreMetadata()
 String FileStitcher.getDimensionOrder(String id)
          Deprecated. Replaced by FileStitcher.getDimensionOrder()
 String FormatReader.getDimensionOrder(String id)
          Deprecated. Replaced by FormatReader.getDimensionOrder()
 String IFormatReader.getDimensionOrder(String id)
          Deprecated. Replaced by IFormatReader.getDimensionOrder()
 String ImageReader.getDimensionOrder(String id)
          Deprecated. Replaced by ImageReader.getDimensionOrder()
 String ReaderWrapper.getDimensionOrder(String id)
          Deprecated. Replaced by IFormatReader#getDimensionOrder()
 String FileStitcher.getDimensionOrder(String id)
          Deprecated. Replaced by FileStitcher.getDimensionOrder()
 String FormatReader.getDimensionOrder(String id)
          Deprecated. Replaced by FormatReader.getDimensionOrder()
 String IFormatReader.getDimensionOrder(String id)
          Deprecated. Replaced by IFormatReader.getDimensionOrder()
 String ImageReader.getDimensionOrder(String id)
          Deprecated. Replaced by ImageReader.getDimensionOrder()
 String ReaderWrapper.getDimensionOrder(String id)
          Deprecated. Replaced by IFormatReader#getDimensionOrder()
 int FileStitcher.getEffectiveSizeC(String id)
          Deprecated. Replaced by FileStitcher.getEffectiveSizeC()
 int FormatReader.getEffectiveSizeC(String id)
          Deprecated. Replaced by FormatReader.getEffectiveSizeC()
 int IFormatReader.getEffectiveSizeC(String id)
          Deprecated. Replaced by IFormatReader.getEffectiveSizeC()
 int ImageReader.getEffectiveSizeC(String id)
          Deprecated. Replaced by ImageReader.getEffectiveSizeC()
 int ReaderWrapper.getEffectiveSizeC(String id)
          Deprecated. Replaced by IFormatReader#getEffectiveSizeC()
 int FileStitcher.getEffectiveSizeC(String id)
          Deprecated. Replaced by FileStitcher.getEffectiveSizeC()
 int FormatReader.getEffectiveSizeC(String id)
          Deprecated. Replaced by FormatReader.getEffectiveSizeC()
 int IFormatReader.getEffectiveSizeC(String id)
          Deprecated. Replaced by IFormatReader.getEffectiveSizeC()
 int ImageReader.getEffectiveSizeC(String id)
          Deprecated. Replaced by ImageReader.getEffectiveSizeC()
 int ReaderWrapper.getEffectiveSizeC(String id)
          Deprecated. Replaced by IFormatReader#getEffectiveSizeC()
 FilePattern FileStitcher.getFilePattern(String id)
          Deprecated. Replaced by FileStitcher.getFilePattern()
 FilePattern FileStitcher.getFilePattern(String id)
          Deprecated. Replaced by FileStitcher.getFilePattern()
 String ImageReader.getFormat(String id)
          Gets a string describing the file format for the given file.
 String ImageWriter.getFormat(String id)
          Gets a string describing the file format for the given file.
 String ImageReader.getFormat(String id)
          Gets a string describing the file format for the given file.
 String ImageWriter.getFormat(String id)
          Gets a string describing the file format for the given file.
static int[] TiffTools.getIFDIntArray(Hashtable ifd, int tag, boolean checkNull)
          Gets the given directory entry values in int format from the specified IFD, performing some error checking.
static int[] TiffTools.getIFDIntArray(Hashtable ifd, int tag, boolean checkNull)
          Gets the given directory entry values in int format from the specified IFD, performing some error checking.
static int TiffTools.getIFDIntValue(Hashtable ifd, int tag, boolean checkNull, int defaultValue)
          Gets the given directory entry value in int format from the specified IFD, performing some error checking.
static int TiffTools.getIFDIntValue(Hashtable ifd, int tag, boolean checkNull, int defaultValue)
          Gets the given directory entry value in int format from the specified IFD, performing some error checking.
static long[] TiffTools.getIFDLongArray(Hashtable ifd, int tag, boolean checkNull)
          Gets the given directory entry values in long format from the specified IFD, performing some error checking.
static long[] TiffTools.getIFDLongArray(Hashtable ifd, int tag, boolean checkNull)
          Gets the given directory entry values in long format from the specified IFD, performing some error checking.
static long TiffTools.getIFDLongValue(Hashtable ifd, int tag, boolean checkNull, long defaultValue)
          Gets the given directory entry value in long format from the specified IFD, performing some error checking.
static long TiffTools.getIFDLongValue(Hashtable ifd, int tag, boolean checkNull, long defaultValue)
          Gets the given directory entry value in long format from the specified IFD, performing some error checking.
static TiffRational TiffTools.getIFDRationalValue(Hashtable ifd, int tag, boolean checkNull)
          Gets the given directory entry value in rational format from the specified IFD, performing some error checking.
static TiffRational TiffTools.getIFDRationalValue(Hashtable ifd, int tag, boolean checkNull)
          Gets the given directory entry value in rational format from the specified IFD, performing some error checking.
static short[] TiffTools.getIFDShortArray(Hashtable ifd, int tag, boolean checkNull)
          Gets the given directory entry values in short format from the specified IFD, performing some error checking.
static short[] TiffTools.getIFDShortArray(Hashtable ifd, int tag, boolean checkNull)
          Gets the given directory entry values in short format from the specified IFD, performing some error checking.
static Object TiffTools.getIFDValue(Hashtable ifd, int tag, boolean checkNull, Class checkClass)
          Gets the given directory entry value from the specified IFD, performing some error checking.
static Object TiffTools.getIFDValue(Hashtable ifd, int tag, boolean checkNull, Class checkClass)
          Gets the given directory entry value from the specified IFD, performing some error checking.
static BufferedImage TiffTools.getImage(Hashtable ifd, RandomAccessStream in)
          Reads the image defined in the given IFD from the specified file.
static BufferedImage TiffTools.getImage(Hashtable ifd, RandomAccessStream in)
          Reads the image defined in the given IFD from the specified file.
 int FileStitcher.getImageCount(String id)
          Deprecated. Replaced by FileStitcher.getImageCount()
 int FormatReader.getImageCount(String id)
          Deprecated. Replaced by FormatReader.getImageCount()
 int IFormatReader.getImageCount(String id)
          Deprecated. Replaced by IFormatReader.getImageCount()
 int ImageReader.getImageCount(String id)
          Deprecated. Replaced by ImageReader.getImageCount()
 int ReaderWrapper.getImageCount(String id)
          Deprecated. Replaced by IFormatReader#getImageCount()
 int FileStitcher.getImageCount(String id)
          Deprecated. Replaced by FileStitcher.getImageCount()
 int FormatReader.getImageCount(String id)
          Deprecated. Replaced by FormatReader.getImageCount()
 int IFormatReader.getImageCount(String id)
          Deprecated. Replaced by IFormatReader.getImageCount()
 int ImageReader.getImageCount(String id)
          Deprecated. Replaced by ImageReader.getImageCount()
 int ReaderWrapper.getImageCount(String id)
          Deprecated. Replaced by IFormatReader#getImageCount()
static long TiffTools.getImageLength(Hashtable ifd)
          Retrieves the image's length (TIFF tag ImageLength) from a given TIFF IFD.
static long TiffTools.getImageLength(Hashtable ifd)
          Retrieves the image's length (TIFF tag ImageLength) from a given TIFF IFD.
static long TiffTools.getImageWidth(Hashtable ifd)
          Retrieves the image's width (TIFF tag ImageWidth) from a given TIFF IFD.
static long TiffTools.getImageWidth(Hashtable ifd)
          Retrieves the image's width (TIFF tag ImageWidth) from a given TIFF IFD.
protected  int[] FileStitcher.getIncludeList(int theC)
          Gets a list of readers to include in relation to the given C position.
protected  int[] FileStitcher.getIncludeList(int theC)
          Gets a list of readers to include in relation to the given C position.
 int FileStitcher.getIndex(String id, int z, int c, int t)
          Deprecated. Replaced by FileStitcher.getIndex(int, int, int)
 int FormatReader.getIndex(String id, int z, int c, int t)
          Deprecated. Replaced by FormatReader.getIndex(int, int, int)
 int IFormatReader.getIndex(String id, int z, int c, int t)
          Deprecated. Replaced by IFormatReader.getIndex(int, int, int)
 int ImageReader.getIndex(String id, int z, int c, int t)
          Deprecated. Replaced by ImageReader.getIndex(int, int, int)
 int ReaderWrapper.getIndex(String id, int z, int c, int t)
          Deprecated. Replaced by IFormatReader#getIndex(int, int, int)
 int FileStitcher.getIndex(String id, int z, int c, int t)
          Deprecated. Replaced by FileStitcher.getIndex(int, int, int)
 int FormatReader.getIndex(String id, int z, int c, int t)
          Deprecated. Replaced by FormatReader.getIndex(int, int, int)
 int IFormatReader.getIndex(String id, int z, int c, int t)
          Deprecated. Replaced by IFormatReader.getIndex(int, int, int)
 int ImageReader.getIndex(String id, int z, int c, int t)
          Deprecated. Replaced by ImageReader.getIndex(int, int, int)
 int ReaderWrapper.getIndex(String id, int z, int c, int t)
          Deprecated. Replaced by IFormatReader#getIndex(int, int, int)
 Hashtable FileStitcher.getMetadata(String id)
          Deprecated. Replaced by FileStitcher.getMetadata()
 Hashtable FormatReader.getMetadata(String id)
          Deprecated. Replaced by FormatReader.getMetadata()
 Hashtable IFormatReader.getMetadata(String id)
          Deprecated. Replaced by IFormatReader.getMetadata()
 Hashtable ImageReader.getMetadata(String id)
          Deprecated. Replaced by ImageReader.getMetadata()
 Hashtable ReaderWrapper.getMetadata(String id)
          Deprecated. Replaced by IFormatReader#getMetadata()
 Hashtable FileStitcher.getMetadata(String id)
          Deprecated. Replaced by FileStitcher.getMetadata()
 Hashtable FormatReader.getMetadata(String id)
          Deprecated. Replaced by FormatReader.getMetadata()
 Hashtable IFormatReader.getMetadata(String id)
          Deprecated. Replaced by IFormatReader.getMetadata()
 Hashtable ImageReader.getMetadata(String id)
          Deprecated. Replaced by ImageReader.getMetadata()
 Hashtable ReaderWrapper.getMetadata(String id)
          Deprecated. Replaced by IFormatReader#getMetadata()
 MetadataStore FileStitcher.getMetadataStore(String id)
          Deprecated. Replaced by FileStitcher.getMetadataStore()
 MetadataStore FormatReader.getMetadataStore(String id)
          Deprecated. Replaced by FormatReader.getMetadataStore()
 MetadataStore IFormatReader.getMetadataStore(String id)
          Deprecated. Replaced by IFormatReader.getMetadataStore()
 MetadataStore ImageReader.getMetadataStore(String id)
          Deprecated. Replaced by ImageReader.getMetadataStore()
 MetadataStore ReaderWrapper.getMetadataStore(String id)
          Deprecated. Replaced by IFormatReader#getMetadataStore()
 MetadataStore FileStitcher.getMetadataStore(String id)
          Deprecated. Replaced by FileStitcher.getMetadataStore()
 MetadataStore FormatReader.getMetadataStore(String id)
          Deprecated. Replaced by FormatReader.getMetadataStore()
 MetadataStore IFormatReader.getMetadataStore(String id)
          Deprecated. Replaced by IFormatReader.getMetadataStore()
 MetadataStore ImageReader.getMetadataStore(String id)
          Deprecated. Replaced by ImageReader.getMetadataStore()
 MetadataStore ReaderWrapper.getMetadataStore(String id)
          Deprecated. Replaced by IFormatReader#getMetadataStore()
 Object FileStitcher.getMetadataStoreRoot(String id)
          Deprecated. Replaced by FileStitcher.getMetadataStoreRoot()
 Object FormatReader.getMetadataStoreRoot(String id)
          Deprecated. Replaced by FormatReader.getMetadataStoreRoot()
 Object IFormatReader.getMetadataStoreRoot(String id)
          Deprecated. Replaced by IFormatReader.getMetadataStoreRoot()
 Object ImageReader.getMetadataStoreRoot(String id)
          Deprecated. Replaced by ImageReader.getMetadataStoreRoot()
 Object ReaderWrapper.getMetadataStoreRoot(String id)
          Deprecated. Replaced by IFormatReader#getMetadataStoreRoot()
 Object FileStitcher.getMetadataStoreRoot(String id)
          Deprecated. Replaced by FileStitcher.getMetadataStoreRoot()
 Object FormatReader.getMetadataStoreRoot(String id)
          Deprecated. Replaced by FormatReader.getMetadataStoreRoot()
 Object IFormatReader.getMetadataStoreRoot(String id)
          Deprecated. Replaced by IFormatReader.getMetadataStoreRoot()
 Object ImageReader.getMetadataStoreRoot(String id)
          Deprecated. Replaced by ImageReader.getMetadataStoreRoot()
 Object ReaderWrapper.getMetadataStoreRoot(String id)
          Deprecated. Replaced by IFormatReader#getMetadataStoreRoot()
 Object FileStitcher.getMetadataValue(String id, String field)
          Deprecated. Replaced by FileStitcher.getMetadataValue(String)
 Object FormatReader.getMetadataValue(String id, String field)
          Deprecated. Replaced by FormatReader.getMetadataValue(String)
 Object IFormatReader.getMetadataValue(String id, String field)
          Deprecated. Replaced by IFormatReader.getMetadataValue(String)
 Object ImageReader.getMetadataValue(String id, String field)
          Deprecated. Replaced by ImageReader.getMetadataValue(String)
 Object ReaderWrapper.getMetadataValue(String id, String field)
          Deprecated. Replaced by IFormatReader#getMetadataValue(String)
 Object FileStitcher.getMetadataValue(String id, String field)
          Deprecated. Replaced by FileStitcher.getMetadataValue(String)
 Object FormatReader.getMetadataValue(String id, String field)
          Deprecated. Replaced by FormatReader.getMetadataValue(String)
 Object IFormatReader.getMetadataValue(String id, String field)
          Deprecated. Replaced by IFormatReader.getMetadataValue(String)
 Object ImageReader.getMetadataValue(String id, String field)
          Deprecated. Replaced by ImageReader.getMetadataValue(String)
 Object ReaderWrapper.getMetadataValue(String id, String field)
          Deprecated. Replaced by IFormatReader#getMetadataValue(String)
static int TiffTools.getPhotometricInterpretation(Hashtable ifd)
          Retrieves the image's photometric interpretation (TIFF tag PhotometricInterpretation) from a given TIFF IFD.
static int TiffTools.getPhotometricInterpretation(Hashtable ifd)
          Retrieves the image's photometric interpretation (TIFF tag PhotometricInterpretation) from a given TIFF IFD.
 Dimension LegacyQTTools.getPictDimensions(byte[] bytes)
          Gets width and height for the given PICT bytes.
 Dimension LegacyQTTools.getPictDimensions(byte[] bytes)
          Gets width and height for the given PICT bytes.
 int FileStitcher.getPixelType(String id)
          Deprecated. Replaced by FileStitcher.getPixelType()
 int FormatReader.getPixelType(String id)
          Deprecated. Replaced by FormatReader.getPixelType()
 int IFormatReader.getPixelType(String id)
          Deprecated. Replaced by IFormatReader.getPixelType()
 int ImageReader.getPixelType(String id)
          Deprecated. Replaced by ImageReader.getPixelType()
 int ReaderWrapper.getPixelType(String id)
          Deprecated. Replaced by IFormatReader#getPixelType()
 int FileStitcher.getPixelType(String id)
          Deprecated. Replaced by FileStitcher.getPixelType()
 int FormatReader.getPixelType(String id)
          Deprecated. Replaced by FormatReader.getPixelType()
 int IFormatReader.getPixelType(String id)
          Deprecated. Replaced by IFormatReader.getPixelType()
 int ImageReader.getPixelType(String id)
          Deprecated. Replaced by ImageReader.getPixelType()
 int ReaderWrapper.getPixelType(String id)
          Deprecated. Replaced by IFormatReader#getPixelType()
 int[] FormatWriter.getPixelTypes(String id)
          Deprecated. Replaced by FormatWriter.getPixelTypes()
 int[] IFormatWriter.getPixelTypes(String id)
          Deprecated. Replaced by IFormatWriter.getPixelTypes()
 int[] ImageWriter.getPixelTypes(String id)
          Deprecated. Replaced by ImageWriter.getPixelTypes()
 int[] FormatWriter.getPixelTypes(String id)
          Deprecated. Replaced by FormatWriter.getPixelTypes()
 int[] IFormatWriter.getPixelTypes(String id)
          Deprecated. Replaced by IFormatWriter.getPixelTypes()
 int[] ImageWriter.getPixelTypes(String id)
          Deprecated. Replaced by ImageWriter.getPixelTypes()
 Double[] MinMaxCalculator.getPlaneMaximum(int no)
          Retrieves the maximum pixel value for the specified plane.
 Double[] MinMaxCalculator.getPlaneMaximum(int no)
          Retrieves the maximum pixel value for the specified plane.
 Double[] MinMaxCalculator.getPlaneMinimum(int no)
          Retrieves the minimum pixel value for the specified plane.
 Double[] MinMaxCalculator.getPlaneMinimum(int no)
          Retrieves the minimum pixel value for the specified plane.
 IFormatReader ImageReader.getReader(String id)
          Gets the reader used to open the given file.
 IFormatReader ImageReader.getReader(String id)
          Gets the reader used to open the given file.
static int FormatTools.getReorderedIndex(IFormatReader r, String order, int no)
          Converts indices from the given dimension order to the native one.
static int FormatTools.getReorderedIndex(IFormatReader r, String order, int no)
          Converts indices from the given dimension order to the native one.
 int FileStitcher.getRGBChannelCount(String id)
          Deprecated. Replaced by FileStitcher.getRGBChannelCount()
 int FormatReader.getRGBChannelCount(String id)
          Deprecated. Replaced by FormatReader.getRGBChannelCount()
 int IFormatReader.getRGBChannelCount(String id)
          Deprecated. Replaced by IFormatReader.getRGBChannelCount()
 int ImageReader.getRGBChannelCount(String id)
          Deprecated. Replaced by ImageReader.getRGBChannelCount()
 int ReaderWrapper.getRGBChannelCount(String id)
          Deprecated. Replaced by IFormatReader#getRGBChannelCount()
 int FileStitcher.getRGBChannelCount(String id)
          Deprecated. Replaced by FileStitcher.getRGBChannelCount()
 int FormatReader.getRGBChannelCount(String id)
          Deprecated. Replaced by FormatReader.getRGBChannelCount()
 int IFormatReader.getRGBChannelCount(String id)
          Deprecated. Replaced by IFormatReader.getRGBChannelCount()
 int ImageReader.getRGBChannelCount(String id)
          Deprecated. Replaced by ImageReader.getRGBChannelCount()
 int ReaderWrapper.getRGBChannelCount(String id)
          Deprecated. Replaced by IFormatReader#getRGBChannelCount()
static long[] TiffTools.getRowsPerStrip(Hashtable ifd)
          Retrieves the number of rows per strip for image (TIFF tag RowsPerStrip) from a given TIFF IFD.
static long[] TiffTools.getRowsPerStrip(Hashtable ifd)
          Retrieves the number of rows per strip for image (TIFF tag RowsPerStrip) from a given TIFF IFD.
static byte[][] TiffTools.getSamples(Hashtable ifd, RandomAccessStream in)
          Reads the image defined in the given IFD from the specified file.
static byte[][] TiffTools.getSamples(Hashtable ifd, RandomAccessStream in)
          Reads the image defined in the given IFD from the specified file.
static byte[] TiffTools.getSamples(Hashtable ifd, RandomAccessStream in, byte[] buf)
           
static byte[] TiffTools.getSamples(Hashtable ifd, RandomAccessStream in, byte[] buf)
           
static int TiffTools.getSamplesPerPixel(Hashtable ifd)
          Retrieves the number of samples per pixel for the image (TIFF tag SamplesPerPixel) from a given TIFF IFD.
static int TiffTools.getSamplesPerPixel(Hashtable ifd)
          Retrieves the number of samples per pixel for the image (TIFF tag SamplesPerPixel) from a given TIFF IFD.
 int FileStitcher.getSeries(String id)
          Deprecated. Replaced by FileStitcher.getSeries()
 int FormatReader.getSeries(String id)
          Deprecated. Replaced by FormatReader.getSeries()
 int IFormatReader.getSeries(String id)
          Deprecated. Replaced by IFormatReader.getSeries()
 int ImageReader.getSeries(String id)
          Deprecated. Replaced by ImageReader.getSeries()
 int ReaderWrapper.getSeries(String id)
          Deprecated. Replaced by IFormatReader#getSeries()
 int FileStitcher.getSeries(String id)
          Deprecated. Replaced by FileStitcher.getSeries()
 int FormatReader.getSeries(String id)
          Deprecated. Replaced by FormatReader.getSeries()
 int IFormatReader.getSeries(String id)
          Deprecated. Replaced by IFormatReader.getSeries()
 int ImageReader.getSeries(String id)
          Deprecated. Replaced by ImageReader.getSeries()
 int ReaderWrapper.getSeries(String id)
          Deprecated. Replaced by IFormatReader#getSeries()
 int FileStitcher.getSeriesCount(String id)
          Deprecated. Replaced by FileStitcher.getSeriesCount()
 int FormatReader.getSeriesCount(String id)
          Deprecated. Replaced by FormatReader.getSeriesCount()
 int IFormatReader.getSeriesCount(String id)
          Deprecated. Replaced by IFormatReader.getSeriesCount()
 int ImageReader.getSeriesCount(String id)
          Deprecated. Replaced by ImageReader.getSeriesCount()
 int ReaderWrapper.getSeriesCount(String id)
          Deprecated. Replaced by IFormatReader#getSeriesCount()
 int FileStitcher.getSeriesCount(String id)
          Deprecated. Replaced by FileStitcher.getSeriesCount()
 int FormatReader.getSeriesCount(String id)
          Deprecated. Replaced by FormatReader.getSeriesCount()
 int IFormatReader.getSeriesCount(String id)
          Deprecated. Replaced by IFormatReader.getSeriesCount()
 int ImageReader.getSeriesCount(String id)
          Deprecated. Replaced by ImageReader.getSeriesCount()
 int ReaderWrapper.getSeriesCount(String id)
          Deprecated. Replaced by IFormatReader#getSeriesCount()
 int FileStitcher.getSizeC(String id)
          Deprecated. Replaced by FileStitcher.getSizeC()
 int FormatReader.getSizeC(String id)
          Deprecated. Replaced by FormatReader.getSizeC()
 int IFormatReader.getSizeC(String id)
          Deprecated. Replaced by IFormatReader.getSizeC()
 int ImageReader.getSizeC(String id)
          Deprecated. Replaced by ImageReader.getSizeC()
 int ReaderWrapper.getSizeC(String id)
          Deprecated. Replaced by IFormatReader#getSizeC()
 int FileStitcher.getSizeC(String id)
          Deprecated. Replaced by FileStitcher.getSizeC()
 int FormatReader.getSizeC(String id)
          Deprecated. Replaced by FormatReader.getSizeC()
 int IFormatReader.getSizeC(String id)
          Deprecated. Replaced by IFormatReader.getSizeC()
 int ImageReader.getSizeC(String id)
          Deprecated. Replaced by ImageReader.getSizeC()
 int ReaderWrapper.getSizeC(String id)
          Deprecated. Replaced by IFormatReader#getSizeC()
 int FileStitcher.getSizeT(String id)
          Deprecated. Replaced by FileStitcher.getSizeT()
 int FormatReader.getSizeT(String id)
          Deprecated. Replaced by FormatReader.getSizeT()
 int IFormatReader.getSizeT(String id)
          Deprecated. Replaced by IFormatReader.getSizeT()
 int ImageReader.getSizeT(String id)
          Deprecated. Replaced by ImageReader.getSizeT()
 int ReaderWrapper.getSizeT(String id)
          Deprecated. Replaced by IFormatReader#getSizeT()
 int FileStitcher.getSizeT(String id)
          Deprecated. Replaced by FileStitcher.getSizeT()
 int FormatReader.getSizeT(String id)
          Deprecated. Replaced by FormatReader.getSizeT()
 int IFormatReader.getSizeT(String id)
          Deprecated. Replaced by IFormatReader.getSizeT()
 int ImageReader.getSizeT(String id)
          Deprecated. Replaced by ImageReader.getSizeT()
 int ReaderWrapper.getSizeT(String id)
          Deprecated. Replaced by IFormatReader#getSizeT()
 int FileStitcher.getSizeX(String id)
          Deprecated. Replaced by FileStitcher.getSizeX()
 int FormatReader.getSizeX(String id)
          Deprecated. Replaced by FormatReader.getSizeX()
 int IFormatReader.getSizeX(String id)
          Deprecated. Replaced by IFormatReader.getSizeX()
 int ImageReader.getSizeX(String id)
          Deprecated. Replaced by ImageReader.getSizeX()
 int ReaderWrapper.getSizeX(String id)
          Deprecated. Replaced by IFormatReader#getSizeX()
 int FileStitcher.getSizeX(String id)
          Deprecated. Replaced by FileStitcher.getSizeX()
 int FormatReader.getSizeX(String id)
          Deprecated. Replaced by FormatReader.getSizeX()
 int IFormatReader.getSizeX(String id)
          Deprecated. Replaced by IFormatReader.getSizeX()
 int ImageReader.getSizeX(String id)
          Deprecated. Replaced by ImageReader.getSizeX()
 int ReaderWrapper.getSizeX(String id)
          Deprecated. Replaced by IFormatReader#getSizeX()
 int FileStitcher.getSizeY(String id)
          Deprecated. Replaced by FileStitcher.getSizeY()
 int FormatReader.getSizeY(String id)
          Deprecated. Replaced by FormatReader.getSizeY()
 int IFormatReader.getSizeY(String id)
          Deprecated. Replaced by IFormatReader.getSizeY()
 int ImageReader.getSizeY(String id)
          Deprecated. Replaced by ImageReader.getSizeY()
 int ReaderWrapper.getSizeY(String id)
          Deprecated. Replaced by IFormatReader#getSizeY()
 int FileStitcher.getSizeY(String id)
          Deprecated. Replaced by FileStitcher.getSizeY()
 int FormatReader.getSizeY(String id)
          Deprecated. Replaced by FormatReader.getSizeY()
 int IFormatReader.getSizeY(String id)
          Deprecated. Replaced by IFormatReader.getSizeY()
 int ImageReader.getSizeY(String id)
          Deprecated. Replaced by ImageReader.getSizeY()
 int ReaderWrapper.getSizeY(String id)
          Deprecated. Replaced by IFormatReader#getSizeY()
 int FileStitcher.getSizeZ(String id)
          Deprecated. Replaced by FileStitcher.getSizeZ()
 int FormatReader.getSizeZ(String id)
          Deprecated. Replaced by FormatReader.getSizeZ()
 int IFormatReader.getSizeZ(String id)
          Deprecated. Replaced by IFormatReader.getSizeZ()
 int ImageReader.getSizeZ(String id)
          Deprecated. Replaced by ImageReader.getSizeZ()
 int ReaderWrapper.getSizeZ(String id)
          Deprecated. Replaced by IFormatReader#getSizeZ()
 int FileStitcher.getSizeZ(String id)
          Deprecated. Replaced by FileStitcher.getSizeZ()
 int FormatReader.getSizeZ(String id)
          Deprecated. Replaced by FormatReader.getSizeZ()
 int IFormatReader.getSizeZ(String id)
          Deprecated. Replaced by IFormatReader.getSizeZ()
 int ImageReader.getSizeZ(String id)
          Deprecated. Replaced by ImageReader.getSizeZ()
 int ReaderWrapper.getSizeZ(String id)
          Deprecated. Replaced by IFormatReader#getSizeZ()
static long[] TiffTools.getStripByteCounts(Hashtable ifd)
          Retrieves strip byte counts for the image (TIFF tag StripByteCounts) from a given TIFF IFD.
static long[] TiffTools.getStripByteCounts(Hashtable ifd)
          Retrieves strip byte counts for the image (TIFF tag StripByteCounts) from a given TIFF IFD.
static long[] TiffTools.getStripOffsets(Hashtable ifd)
          Retrieves the strip offsets for the image (TIFF tag StripOffsets) from a given TIFF IFD.
static long[] TiffTools.getStripOffsets(Hashtable ifd)
          Retrieves the strip offsets for the image (TIFF tag StripOffsets) from a given TIFF IFD.
 int FileStitcher.getThumbSizeX(String id)
          Deprecated. Replaced by FileStitcher.getThumbSizeX()
 int FormatReader.getThumbSizeX(String id)
          Deprecated. Replaced by FormatReader.getThumbSizeX()
 int IFormatReader.getThumbSizeX(String id)
          Deprecated. Replaced by IFormatReader.getThumbSizeX()
 int ImageReader.getThumbSizeX(String id)
          Deprecated. Replaced by ImageReader.getThumbSizeX()
 int ReaderWrapper.getThumbSizeX(String id)
          Deprecated. Replaced by IFormatReader#getThumbSizeX()
 int FileStitcher.getThumbSizeX(String id)
          Deprecated. Replaced by FileStitcher.getThumbSizeX()
 int FormatReader.getThumbSizeX(String id)
          Deprecated. Replaced by FormatReader.getThumbSizeX()
 int IFormatReader.getThumbSizeX(String id)
          Deprecated. Replaced by IFormatReader.getThumbSizeX()
 int ImageReader.getThumbSizeX(String id)
          Deprecated. Replaced by ImageReader.getThumbSizeX()
 int ReaderWrapper.getThumbSizeX(String id)
          Deprecated. Replaced by IFormatReader#getThumbSizeX()
 int FileStitcher.getThumbSizeY(String id)
          Deprecated. Replaced by FileStitcher.getThumbSizeY()
 int FormatReader.getThumbSizeY(String id)
          Deprecated. Replaced by FormatReader.getThumbSizeY()
 int IFormatReader.getThumbSizeY(String id)
          Deprecated. Replaced by IFormatReader.getThumbSizeY()
 int ImageReader.getThumbSizeY(String id)
          Deprecated. Replaced by ImageReader.getThumbSizeY()
 int ReaderWrapper.getThumbSizeY(String id)
          Deprecated. Replaced by IFormatReader#getThumbSizeY()
 int FileStitcher.getThumbSizeY(String id)
          Deprecated. Replaced by FileStitcher.getThumbSizeY()
 int FormatReader.getThumbSizeY(String id)
          Deprecated. Replaced by FormatReader.getThumbSizeY()
 int IFormatReader.getThumbSizeY(String id)
          Deprecated. Replaced by IFormatReader.getThumbSizeY()
 int ImageReader.getThumbSizeY(String id)
          Deprecated. Replaced by ImageReader.getThumbSizeY()
 int ReaderWrapper.getThumbSizeY(String id)
          Deprecated. Replaced by IFormatReader#getThumbSizeY()
 String[] FileStitcher.getUsedFiles(String id)
          Deprecated. Replaced by FileStitcher.getUsedFiles()
 String[] FormatReader.getUsedFiles(String id)
          Deprecated. Replaced by FormatReader.getUsedFiles()
 String[] IFormatReader.getUsedFiles(String id)
          Deprecated. Replaced by IFormatReader.getUsedFiles()
 String[] ImageReader.getUsedFiles(String id)
          Deprecated. Replaced by ImageReader.getUsedFiles()
 String[] ReaderWrapper.getUsedFiles(String id)
          Deprecated. Replaced by IFormatReader#getUsedFiles()
 String[] FileStitcher.getUsedFiles(String id)
          Deprecated. Replaced by FileStitcher.getUsedFiles()
 String[] FormatReader.getUsedFiles(String id)
          Deprecated. Replaced by FormatReader.getUsedFiles()
 String[] IFormatReader.getUsedFiles(String id)
          Deprecated. Replaced by IFormatReader.getUsedFiles()
 String[] ImageReader.getUsedFiles(String id)
          Deprecated. Replaced by ImageReader.getUsedFiles()
 String[] ReaderWrapper.getUsedFiles(String id)
          Deprecated. Replaced by IFormatReader#getUsedFiles()
 IFormatWriter ImageWriter.getWriter(String id)
          Gets the writer used to save the given file.
 IFormatWriter ImageWriter.getWriter(String id)
          Gets the writer used to save the given file.
 int[] FileStitcher.getZCTCoords(String id, int index)
          Deprecated. Replaced by FileStitcher.getZCTCoords(int)
 int[] FormatReader.getZCTCoords(String id, int index)
          Deprecated. Replaced by FormatReader.getZCTCoords(int)
 int[] IFormatReader.getZCTCoords(String id, int index)
          Deprecated. Replaced by IFormatReader.getZCTCoords(int)
 int[] ImageReader.getZCTCoords(String id, int index)
          Deprecated. Replaced by ImageReader.getZCTCoords(int)
 int[] ReaderWrapper.getZCTCoords(String id, int index)
          Deprecated. Replaced by IFormatReader#getZCTCoords(int)
 int[] FileStitcher.getZCTCoords(String id, int index)
          Deprecated. Replaced by FileStitcher.getZCTCoords(int)
 int[] FormatReader.getZCTCoords(String id, int index)
          Deprecated. Replaced by FormatReader.getZCTCoords(int)
 int[] IFormatReader.getZCTCoords(String id, int index)
          Deprecated. Replaced by IFormatReader.getZCTCoords(int)
 int[] ImageReader.getZCTCoords(String id, int index)
          Deprecated. Replaced by ImageReader.getZCTCoords(int)
 int[] ReaderWrapper.getZCTCoords(String id, int index)
          Deprecated. Replaced by IFormatReader#getZCTCoords(int)
protected  void FileStitcher.initFile(String id)
          Initializes the given file.
protected  void FormatReader.initFile(String id)
          Initializes the given file (parsing header information, etc.).
protected  void FileStitcher.initFile(String id)
          Initializes the given file.
protected  void FormatReader.initFile(String id)
          Initializes the given file (parsing header information, etc.).
protected  void MinMaxCalculator.initMinMax()
          Ensures internal min/max variables are initialized properly.
protected  void MinMaxCalculator.initMinMax()
          Ensures internal min/max variables are initialized properly.
static boolean TiffTools.isBigTiff(Hashtable ifd)
          Gets whether this is a BigTIFF IFD.
static boolean TiffTools.isBigTiff(Hashtable ifd)
          Gets whether this is a BigTIFF IFD.
 boolean FileStitcher.isInterleaved(String id)
          Deprecated. Replaced by FileStitcher.isInterleaved()
 boolean FormatReader.isInterleaved(String id)
          Deprecated. Replaced by FormatReader.isInterleaved()
 boolean IFormatReader.isInterleaved(String id)
          Deprecated. Replaced by IFormatReader.isInterleaved()
 boolean ImageReader.isInterleaved(String id)
          Deprecated. Replaced by ImageReader.isInterleaved()
 boolean ReaderWrapper.isInterleaved(String id)
          Deprecated. Replaced by IFormatReader#isInterleaved()
 boolean FileStitcher.isInterleaved(String id)
          Deprecated. Replaced by FileStitcher.isInterleaved()
 boolean FormatReader.isInterleaved(String id)
          Deprecated. Replaced by FormatReader.isInterleaved()
 boolean IFormatReader.isInterleaved(String id)
          Deprecated. Replaced by IFormatReader.isInterleaved()
 boolean ImageReader.isInterleaved(String id)
          Deprecated. Replaced by ImageReader.isInterleaved()
 boolean ReaderWrapper.isInterleaved(String id)
          Deprecated. Replaced by IFormatReader#isInterleaved()
 boolean FileStitcher.isInterleaved(String id, int subC)
          Deprecated. Replaced by FileStitcher.isInterleaved(int)
 boolean FormatReader.isInterleaved(String id, int subC)
          Deprecated. Replaced by FormatReader.isInterleaved(int)
 boolean IFormatReader.isInterleaved(String id, int subC)
          Deprecated. Replaced by IFormatReader.isInterleaved(int)
 boolean ImageReader.isInterleaved(String id, int subC)
          Deprecated. Replaced by ImageReader.isInterleaved(int)
 boolean ReaderWrapper.isInterleaved(String id, int subC)
          Deprecated. Replaced by IFormatReader#isInterleaved(int)
 boolean FileStitcher.isInterleaved(String id, int subC)
          Deprecated. Replaced by FileStitcher.isInterleaved(int)
 boolean FormatReader.isInterleaved(String id, int subC)
          Deprecated. Replaced by FormatReader.isInterleaved(int)
 boolean IFormatReader.isInterleaved(String id, int subC)
          Deprecated. Replaced by IFormatReader.isInterleaved(int)
 boolean ImageReader.isInterleaved(String id, int subC)
          Deprecated. Replaced by ImageReader.isInterleaved(int)
 boolean ReaderWrapper.isInterleaved(String id, int subC)
          Deprecated. Replaced by IFormatReader#isInterleaved(int)
static boolean TiffTools.isLittleEndian(Hashtable ifd)
          Gets whether the TIFF information in the given IFD is little-endian.
static boolean TiffTools.isLittleEndian(Hashtable ifd)
          Gets whether the TIFF information in the given IFD is little-endian.
 boolean FileStitcher.isLittleEndian(String id)
          Deprecated. Replaced by FileStitcher.isLittleEndian()
 boolean FormatReader.isLittleEndian(String id)
          Deprecated. Replaced by FormatReader.isLittleEndian()
 boolean IFormatReader.isLittleEndian(String id)
          Deprecated. Replaced by IFormatReader.isLittleEndian()
 boolean ImageReader.isLittleEndian(String id)
          Deprecated. Replaced by ImageReader.isLittleEndian()
 boolean ReaderWrapper.isLittleEndian(String id)
          Deprecated. Replaced by IFormatReader#isLittleEndian()
 boolean FileStitcher.isLittleEndian(String id)
          Deprecated. Replaced by FileStitcher.isLittleEndian()
 boolean FormatReader.isLittleEndian(String id)
          Deprecated. Replaced by FormatReader.isLittleEndian()
 boolean IFormatReader.isLittleEndian(String id)
          Deprecated. Replaced by IFormatReader.isLittleEndian()
 boolean ImageReader.isLittleEndian(String id)
          Deprecated. Replaced by ImageReader.isLittleEndian()
 boolean ReaderWrapper.isLittleEndian(String id)
          Deprecated. Replaced by IFormatReader#isLittleEndian()
 boolean MinMaxCalculator.isMinMaxPopulated()
          Returns true if the values returned by getChannelGlobalMinimum/Maximum can be trusted.
 boolean MinMaxCalculator.isMinMaxPopulated()
          Returns true if the values returned by getChannelGlobalMinimum/Maximum can be trusted.
 boolean FileStitcher.isOrderCertain(String id)
          Deprecated. Replaced by FileStitcher.isOrderCertain()
 boolean FormatReader.isOrderCertain(String id)
          Deprecated. Replaced by FormatReader.isOrderCertain()
 boolean IFormatReader.isOrderCertain(String id)
          Deprecated. Replaced by IFormatReader.isOrderCertain()
 boolean ImageReader.isOrderCertain(String id)
          Deprecated. Replaced by ImageReader.isOrderCertain()
 boolean ReaderWrapper.isOrderCertain(String id)
          Deprecated. Replaced by IFormatReader#isOrderCertain()
 boolean FileStitcher.isOrderCertain(String id)
          Deprecated. Replaced by FileStitcher.isOrderCertain()
 boolean FormatReader.isOrderCertain(String id)
          Deprecated. Replaced by FormatReader.isOrderCertain()
 boolean IFormatReader.isOrderCertain(String id)
          Deprecated. Replaced by IFormatReader.isOrderCertain()
 boolean ImageReader.isOrderCertain(String id)
          Deprecated. Replaced by ImageReader.isOrderCertain()
 boolean ReaderWrapper.isOrderCertain(String id)
          Deprecated. Replaced by IFormatReader#isOrderCertain()
 boolean FileStitcher.isRGB(String id)
          Deprecated. Replaced by FileStitcher.isRGB()
 boolean FormatReader.isRGB(String id)
          Deprecated. Replaced by FormatReader.isRGB()
 boolean IFormatReader.isRGB(String id)
          Deprecated. Replaced by IFormatReader.isRGB()
 boolean ImageReader.isRGB(String id)
          Deprecated. Replaced by ImageReader.isRGB()
 boolean ReaderWrapper.isRGB(String id)
          Deprecated. Replaced by IFormatReader#isRGB()
 boolean FileStitcher.isRGB(String id)
          Deprecated. Replaced by FileStitcher.isRGB()
 boolean FormatReader.isRGB(String id)
          Deprecated. Replaced by FormatReader.isRGB()
 boolean IFormatReader.isRGB(String id)
          Deprecated. Replaced by IFormatReader.isRGB()
 boolean ImageReader.isRGB(String id)
          Deprecated. Replaced by ImageReader.isRGB()
 boolean ReaderWrapper.isRGB(String id)
          Deprecated. Replaced by IFormatReader#isRGB()
 boolean FormatWriter.isSupportedType(String id, int type)
          Deprecated. Replaced by FormatWriter.isSupportedType(int type)
 boolean IFormatWriter.isSupportedType(String id, int type)
          Deprecated. Replaced by IFormatWriter.isSupportedType(int type)
 boolean ImageWriter.isSupportedType(String id, int type)
          Deprecated. Replaced by ImageWriter.isSupportedType(int type)
 boolean FormatWriter.isSupportedType(String id, int type)
          Deprecated. Replaced by FormatWriter.isSupportedType(int type)
 boolean IFormatWriter.isSupportedType(String id, int type)
          Deprecated. Replaced by IFormatWriter.isSupportedType(int type)
 boolean ImageWriter.isSupportedType(String id, int type)
          Deprecated. Replaced by ImageWriter.isSupportedType(int type)
static void AxisGuesser.main(String[] args)
          Method for testing pattern guessing logic.
static void AxisGuesser.main(String[] args)
          Method for testing pattern guessing logic.
 byte[] ChannelFiller.openBytes(int no)
           
 byte[] ChannelMerger.openBytes(int no)
          Obtains the specified image from the given file as a byte array.
 byte[] ChannelSeparator.openBytes(int no)
           
 byte[] FileStitcher.openBytes(int no)
           
 byte[] FormatReader.openBytes(int no)
           
 byte[] IFormatReader.openBytes(int no)
          Obtains the specified image from the current file as a byte array.
 byte[] ImageReader.openBytes(int no)
           
 byte[] MinMaxCalculator.openBytes(int no)
           
 byte[] ReaderWrapper.openBytes(int no)
           
 byte[] ChannelFiller.openBytes(int no)
           
 byte[] ChannelMerger.openBytes(int no)
          Obtains the specified image from the given file as a byte array.
 byte[] ChannelSeparator.openBytes(int no)
           
 byte[] FileStitcher.openBytes(int no)
           
 byte[] FormatReader.openBytes(int no)
           
 byte[] IFormatReader.openBytes(int no)
          Obtains the specified image from the current file as a byte array.
 byte[] ImageReader.openBytes(int no)
           
 byte[] MinMaxCalculator.openBytes(int no)
           
 byte[] ReaderWrapper.openBytes(int no)
           
 byte[] FileStitcher.openBytes(int no, byte[] buf)
           
 byte[] IFormatReader.openBytes(int no, byte[] buf)
          Obtains the specified image from the current file into a pre-allocated byte array of (sizeX * sizeY * bytesPerPixel).
 byte[] ImageReader.openBytes(int no, byte[] buf)
           
 byte[] MinMaxCalculator.openBytes(int no, byte[] buf)
           
 byte[] ReaderWrapper.openBytes(int no, byte[] buf)
           
 byte[] FileStitcher.openBytes(int no, byte[] buf)
           
 byte[] IFormatReader.openBytes(int no, byte[] buf)
          Obtains the specified image from the current file into a pre-allocated byte array of (sizeX * sizeY * bytesPerPixel).
 byte[] ImageReader.openBytes(int no, byte[] buf)
           
 byte[] MinMaxCalculator.openBytes(int no, byte[] buf)
           
 byte[] ReaderWrapper.openBytes(int no, byte[] buf)
           
 byte[] FileStitcher.openBytes(String id, int no)
          Deprecated. Replaced by FileStitcher.openBytes(int)
 byte[] FormatReader.openBytes(String id, int no)
          Deprecated. Replaced by FormatReader.openBytes(int)
 byte[] IFormatReader.openBytes(String id, int no)
          Deprecated. Replaced by IFormatReader.openBytes(int)
 byte[] ImageReader.openBytes(String id, int no)
          Deprecated. Replaced by ImageReader.openBytes(int)
 byte[] MinMaxCalculator.openBytes(String id, int no)
          Deprecated. Replaced by MinMaxCalculator.openBytes(int)
 byte[] ReaderWrapper.openBytes(String id, int no)
          Deprecated. Replaced by IFormatReader#openBytes(int)
 byte[] FileStitcher.openBytes(String id, int no)
          Deprecated. Replaced by FileStitcher.openBytes(int)
 byte[] FormatReader.openBytes(String id, int no)
          Deprecated. Replaced by FormatReader.openBytes(int)
 byte[] IFormatReader.openBytes(String id, int no)
          Deprecated. Replaced by IFormatReader.openBytes(int)
 byte[] ImageReader.openBytes(String id, int no)
          Deprecated. Replaced by ImageReader.openBytes(int)
 byte[] MinMaxCalculator.openBytes(String id, int no)
          Deprecated. Replaced by MinMaxCalculator.openBytes(int)
 byte[] ReaderWrapper.openBytes(String id, int no)
          Deprecated. Replaced by IFormatReader#openBytes(int)
 byte[] FileStitcher.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by FileStitcher.openBytes(int, byte[])
 byte[] FormatReader.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by IFormatReader.openBytes(int, byte[])
 byte[] IFormatReader.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by IFormatReader.openBytes(int, byte[])
 byte[] ImageReader.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by ImageReader.openBytes(int, byte[])
 byte[] MinMaxCalculator.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by MinMaxCalculator.openBytes(int, byte[])
 byte[] ReaderWrapper.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by IFormatReader#openBytes(int, byte[])
 byte[] FileStitcher.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by FileStitcher.openBytes(int, byte[])
 byte[] FormatReader.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by IFormatReader.openBytes(int, byte[])
 byte[] IFormatReader.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by IFormatReader.openBytes(int, byte[])
 byte[] ImageReader.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by ImageReader.openBytes(int, byte[])
 byte[] MinMaxCalculator.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by MinMaxCalculator.openBytes(int, byte[])
 byte[] ReaderWrapper.openBytes(String id, int no, byte[] buf)
          Deprecated. Replaced by IFormatReader#openBytes(int, byte[])
 BufferedImage ChannelFiller.openImage(int no)
           
 BufferedImage ChannelMerger.openImage(int no)
           
 BufferedImage ChannelSeparator.openImage(int no)
           
 BufferedImage FileStitcher.openImage(int no)
           
 BufferedImage FormatReader.openImage(int no)
           
 BufferedImage IFormatReader.openImage(int no)
          Obtains the specified image from the current file.
 BufferedImage ImageReader.openImage(int no)
           
 BufferedImage MinMaxCalculator.openImage(int no)
           
 BufferedImage ReaderWrapper.openImage(int no)
           
 BufferedImage ChannelFiller.openImage(int no)
           
 BufferedImage ChannelMerger.openImage(int no)
           
 BufferedImage ChannelSeparator.openImage(int no)
           
 BufferedImage FileStitcher.openImage(int no)
           
 BufferedImage FormatReader.openImage(int no)
           
 BufferedImage IFormatReader.openImage(int no)
          Obtains the specified image from the current file.
 BufferedImage ImageReader.openImage(int no)
           
 BufferedImage MinMaxCalculator.openImage(int no)
           
 BufferedImage ReaderWrapper.openImage(int no)
           
 BufferedImage FileStitcher.openImage(String id, int no)
          Deprecated. Replaced by FileStitcher.openImage(int)
 BufferedImage FormatReader.openImage(String id, int no)
          Deprecated. Replaced by FormatReader.openImage(int)
 BufferedImage IFormatReader.openImage(String id, int no)
          Deprecated. Replaced by IFormatReader.openImage(int)
 BufferedImage ImageReader.openImage(String id, int no)
          Deprecated. Replaced by ImageReader.openImage(int)
 BufferedImage MinMaxCalculator.openImage(String id, int no)
          Deprecated. Replaced by MinMaxCalculator.openImage(int)
 BufferedImage ReaderWrapper.openImage(String id, int no)
          Deprecated. Replaced by IFormatReader#openImage(int)
 BufferedImage FileStitcher.openImage(String id, int no)
          Deprecated. Replaced by FileStitcher.openImage(int)
 BufferedImage FormatReader.openImage(String id, int no)
          Deprecated. Replaced by FormatReader.openImage(int)
 BufferedImage IFormatReader.openImage(String id, int no)
          Deprecated. Replaced by IFormatReader.openImage(int)
 BufferedImage ImageReader.openImage(String id, int no)
          Deprecated. Replaced by ImageReader.openImage(int)
 BufferedImage MinMaxCalculator.openImage(String id, int no)
          Deprecated. Replaced by MinMaxCalculator.openImage(int)
 BufferedImage ReaderWrapper.openImage(String id, int no)
          Deprecated. Replaced by IFormatReader#openImage(int)
 byte[] FileStitcher.openThumbBytes(int no)
           
 byte[] FormatReader.openThumbBytes(int no)
           
 byte[] IFormatReader.openThumbBytes(int no)
          Obtains a thumbnail for the specified image from the current file, as a byte array.
 byte[] ImageReader.openThumbBytes(int no)
           
 byte[] ReaderWrapper.openThumbBytes(int no)
           
 byte[] FileStitcher.openThumbBytes(int no)
           
 byte[] FormatReader.openThumbBytes(int no)
           
 byte[] IFormatReader.openThumbBytes(int no)
          Obtains a thumbnail for the specified image from the current file, as a byte array.
 byte[] ImageReader.openThumbBytes(int no)
           
 byte[] ReaderWrapper.openThumbBytes(int no)
           
 byte[] FileStitcher.openThumbBytes(String id, int no)
          Deprecated. Replaced by FileStitcher.openThumbImage(int)
 byte[] FormatReader.openThumbBytes(String id, int no)
          Deprecated. Replaced by FormatReader.openThumbBytes(int)
 byte[] IFormatReader.openThumbBytes(String id, int no)
          Deprecated. Replaced by IFormatReader.openThumbBytes(int)
 byte[] ImageReader.openThumbBytes(String id, int no)
          Deprecated. Replaced by ImageReader.openThumbBytes(int)
 byte[] ReaderWrapper.openThumbBytes(String id, int no)
          Deprecated. Replaced by IFormatReader#openThumbBytes(int)
 byte[] FileStitcher.openThumbBytes(String id, int no)
          Deprecated. Replaced by FileStitcher.openThumbImage(int)
 byte[] FormatReader.openThumbBytes(String id, int no)
          Deprecated. Replaced by FormatReader.openThumbBytes(int)
 byte[] IFormatReader.openThumbBytes(String id, int no)
          Deprecated. Replaced by IFormatReader.openThumbBytes(int)
 byte[] ImageReader.openThumbBytes(String id, int no)
          Deprecated. Replaced by ImageReader.openThumbBytes(int)
 byte[] ReaderWrapper.openThumbBytes(String id, int no)
          Deprecated. Replaced by IFormatReader#openThumbBytes(int)
 BufferedImage ChannelMerger.openThumbImage(int no)
           
 BufferedImage ChannelSeparator.openThumbImage(int no)
           
 BufferedImage FileStitcher.openThumbImage(int no)
           
 BufferedImage FormatReader.openThumbImage(int no)
           
 BufferedImage IFormatReader.openThumbImage(int no)
          Obtains a thumbnail for the specified image from the current file.
 BufferedImage ImageReader.openThumbImage(int no)
           
 BufferedImage ReaderWrapper.openThumbImage(int no)
           
 BufferedImage ChannelMerger.openThumbImage(int no)
           
 BufferedImage ChannelSeparator.openThumbImage(int no)
           
 BufferedImage FileStitcher.openThumbImage(int no)
           
 BufferedImage FormatReader.openThumbImage(int no)
           
 BufferedImage IFormatReader.openThumbImage(int no)
          Obtains a thumbnail for the specified image from the current file.
 BufferedImage ImageReader.openThumbImage(int no)
           
 BufferedImage ReaderWrapper.openThumbImage(int no)
           
 BufferedImage FileStitcher.openThumbImage(String id, int no)
          Deprecated. Replaced by FileStitcher.openThumbImage(int)
 BufferedImage FormatReader.openThumbImage(String id, int no)
          Deprecated. Replaced by FormatReader.openThumbImage(int)
 BufferedImage IFormatReader.openThumbImage(String id, int no)
          Deprecated. Replaced by IFormatReader.openThumbImage(int)
 BufferedImage ImageReader.openThumbImage(String id, int no)
          Deprecated. Replaced by ImageReader.openThumbImage(int)
 BufferedImage ReaderWrapper.openThumbImage(String id, int no)
          Deprecated. Replaced by IFormatReader#openThumbImage(int)
 BufferedImage FileStitcher.openThumbImage(String id, int no)
          Deprecated. Replaced by FileStitcher.openThumbImage(int)
 BufferedImage FormatReader.openThumbImage(String id, int no)
          Deprecated. Replaced by FormatReader.openThumbImage(int)
 BufferedImage IFormatReader.openThumbImage(String id, int no)
          Deprecated. Replaced by IFormatReader.openThumbImage(int)
 BufferedImage ImageReader.openThumbImage(String id, int no)
          Deprecated. Replaced by ImageReader.openThumbImage(int)
 BufferedImage ReaderWrapper.openThumbImage(String id, int no)
          Deprecated. Replaced by IFormatReader#openThumbImage(int)
static void TiffTools.overwriteComment(String id, Object value)
          Convenience method for overwriting a file's first ImageDescription.
static void TiffTools.overwriteComment(String id, Object value)
          Convenience method for overwriting a file's first ImageDescription.
static void TiffTools.overwriteIFDValue(RandomAccessFile raf, int ifd, int tag, Object value)
          Surgically overwrites an existing IFD value with the given one.
static void TiffTools.overwriteIFDValue(RandomAccessFile raf, int ifd, int tag, Object value)
          Surgically overwrites an existing IFD value with the given one.
 Image LegacyQTTools.pictToImage(byte[] bytes)
          Converts the given byte array in PICT format to a Java image.
 Image LegacyQTTools.pictToImage(byte[] bytes)
          Converts the given byte array in PICT format to a Java image.
static void TiffTools.planarUnpack(short[][] samples, int startIndex, byte[] bytes, int[] bitsPerSample, int photoInterp, boolean littleEndian, int strip, int numStrips)
          Extracts pixel information from the given byte array according to the bits per sample, photometric interpretation, and the specified byte ordering.
static void TiffTools.planarUnpack(short[][] samples, int startIndex, byte[] bytes, int[] bitsPerSample, int photoInterp, boolean littleEndian, int strip, int numStrips)
          Extracts pixel information from the given byte array according to the bits per sample, photometric interpretation, and the specified byte ordering.
 void FormatWriter.save(String id, Image image, boolean last)
          Deprecated. Replaced by IFormatWriter.saveImage(Image, boolean)
 void IFormatWriter.save(String id, Image image, boolean last)
          Deprecated. Replaced by IFormatWriter.saveImage(Image, boolean)
 void ImageWriter.save(String id, Image image, boolean last)
          Deprecated. Replaced by ImageWriter.saveImage(Image, boolean)
 void FormatWriter.save(String id, Image image, boolean last)
          Deprecated. Replaced by IFormatWriter.saveImage(Image, boolean)
 void IFormatWriter.save(String id, Image image, boolean last)
          Deprecated. Replaced by IFormatWriter.saveImage(Image, boolean)
 void ImageWriter.save(String id, Image image, boolean last)
          Deprecated. Replaced by ImageWriter.saveImage(Image, boolean)
 void FormatWriter.saveBytes(byte[] bytes, boolean last)
           
 void IFormatWriter.saveBytes(byte[] bytes, boolean last)
          Saves the given byte array to the current file.
 void ImageWriter.saveBytes(byte[] bytes, boolean last)
           
 void FormatWriter.saveBytes(byte[] bytes, boolean last)
           
 void IFormatWriter.saveBytes(byte[] bytes, boolean last)
          Saves the given byte array to the current file.
 void ImageWriter.saveBytes(byte[] bytes, boolean last)
           
 void FormatWriter.saveBytes(byte[] bytes, int series, boolean lastInSeries, boolean last)
           
 void IFormatWriter.saveBytes(byte[] bytes, int series, boolean lastInSeries, boolean last)
          Saves the given byte array to the given series in the current file.
 void ImageWriter.saveBytes(byte[] bytes, int series, boolean lastInSeries, boolean last)
           
 void FormatWriter.saveBytes(byte[] bytes, int series, boolean lastInSeries, boolean last)
           
 void IFormatWriter.saveBytes(byte[] bytes, int series, boolean lastInSeries, boolean last)
          Saves the given byte array to the given series in the current file.
 void ImageWriter.saveBytes(byte[] bytes, int series, boolean lastInSeries, boolean last)
           
 void IFormatWriter.saveImage(Image image, boolean last)
          Saves the given image to the current file.
 void ImageWriter.saveImage(Image image, boolean last)
           
 void IFormatWriter.saveImage(Image image, boolean last)
          Saves the given image to the current file.
 void ImageWriter.saveImage(Image image, boolean last)
           
 void FormatWriter.saveImage(Image image, int series, boolean lastInSeries, boolean last)
           
 void IFormatWriter.saveImage(Image image, int series, boolean lastInSeries, boolean last)
          Saves the given image to the given series in the current file.
 void ImageWriter.saveImage(Image image, int series, boolean lastInSeries, boolean last)
           
 void FormatWriter.saveImage(Image image, int series, boolean lastInSeries, boolean last)
           
 void IFormatWriter.saveImage(Image image, int series, boolean lastInSeries, boolean last)
          Saves the given image to the given series in the current file.
 void ImageWriter.saveImage(Image image, int series, boolean lastInSeries, boolean last)
           
 void FileStitcher.setAxisTypes(int[] axes)
          Sets the axis type for each dimensional block.
 void FileStitcher.setAxisTypes(int[] axes)
          Sets the axis type for each dimensional block.
 void FileStitcher.setAxisTypes(String id, int[] axes)
          Deprecated. Replaced by FileStitcher.setAxisTypes(int[])
 void FileStitcher.setAxisTypes(String id, int[] axes)
          Deprecated. Replaced by FileStitcher.setAxisTypes(int[])
 void FormatWriter.setCompression(String compress)
           
 void IFormatWriter.setCompression(String compress)
          Sets the current compression type.
 void ImageWriter.setCompression(String compress)
           
 void FormatWriter.setCompression(String compress)
           
 void IFormatWriter.setCompression(String compress)
          Sets the current compression type.
 void ImageWriter.setCompression(String compress)
           
 void ChannelSeparator.setId(String id)
           
 void FileStitcher.setId(String id)
           
 void FormatHandler.setId(String id)
           
 void IFormatHandler.setId(String id)
          Sets the current file name.
 void ImageReader.setId(String id)
           
 void ImageWriter.setId(String id)
           
 void ReaderWrapper.setId(String id)
           
 void ChannelSeparator.setId(String id)
           
 void FileStitcher.setId(String id)
           
 void FormatHandler.setId(String id)
           
 void IFormatHandler.setId(String id)
          Sets the current file name.
 void ImageReader.setId(String id)
           
 void ImageWriter.setId(String id)
           
 void ReaderWrapper.setId(String id)
           
 void ChannelSeparator.setId(String id, boolean force)
           
 void FileStitcher.setId(String id, boolean force)
           
 void FormatReader.setId(String id, boolean force)
           
 void FormatWriter.setId(String id, boolean force)
           
 void IFormatHandler.setId(String id, boolean force)
          Sets the current file name.
 void ImageReader.setId(String id, boolean force)
           
 void ImageWriter.setId(String id, boolean force)
           
 void ReaderWrapper.setId(String id, boolean force)
           
 void ChannelSeparator.setId(String id, boolean force)
           
 void FileStitcher.setId(String id, boolean force)
           
 void FormatReader.setId(String id, boolean force)
           
 void FormatWriter.setId(String id, boolean force)
           
 void IFormatHandler.setId(String id, boolean force)
          Sets the current file name.
 void ImageReader.setId(String id, boolean force)
           
 void ImageWriter.setId(String id, boolean force)
           
 void ReaderWrapper.setId(String id, boolean force)
           
 void FileStitcher.setSeries(String id, int no)
          Deprecated. Replaced by FileStitcher.setSeries(int)
 void FormatReader.setSeries(String id, int no)
          Deprecated. Replaced by FormatReader.setSeries(int)
 void IFormatReader.setSeries(String id, int no)
          Deprecated. Replaced by IFormatReader.setSeries(int)
 void ImageReader.setSeries(String id, int no)
          Deprecated. Replaced by ImageReader.setSeries(int)
 void ReaderWrapper.setSeries(String id, int no)
          Deprecated. Replaced by IFormatReader#setSeries(int)
 void FileStitcher.setSeries(String id, int no)
          Deprecated. Replaced by FileStitcher.setSeries(int)
 void FormatReader.setSeries(String id, int no)
          Deprecated. Replaced by FormatReader.setSeries(int)
 void IFormatReader.setSeries(String id, int no)
          Deprecated. Replaced by IFormatReader.setSeries(int)
 void ImageReader.setSeries(String id, int no)
          Deprecated. Replaced by ImageReader.setSeries(int)
 void ReaderWrapper.setSeries(String id, int no)
          Deprecated. Replaced by IFormatReader#setSeries(int)
static byte[] TiffTools.uncompress(byte[] input, int compression)
          Decodes a strip of data compressed with the given compression scheme.
static byte[] TiffTools.uncompress(byte[] input, int compression)
          Decodes a strip of data compressed with the given compression scheme.
static void TiffTools.undifference(byte[] input, int[] bitsPerSample, long width, int planarConfig, int predictor)
          Undoes in-place differencing according to the given predictor value.
static void TiffTools.undifference(byte[] input, int[] bitsPerSample, long width, int planarConfig, int predictor)
          Undoes in-place differencing according to the given predictor value.
static void TiffTools.unpackBytes(short[][] samples, int startIndex, byte[] bytes, int[] bitsPerSample, int photoInterp, int[] colorMap, boolean littleEndian, long maxValue, int planar, int strip, int numStrips, long imageWidth)
          Extracts pixel information from the given byte array according to the bits per sample, photometric interpretation and color map IFD directory entry values, and the specified byte ordering.
static void TiffTools.unpackBytes(short[][] samples, int startIndex, byte[] bytes, int[] bitsPerSample, int photoInterp, int[] colorMap, boolean littleEndian, long maxValue, int planar, int strip, int numStrips, long imageWidth)
          Extracts pixel information from the given byte array according to the bits per sample, photometric interpretation and color map IFD directory entry values, and the specified byte ordering.
protected  void MinMaxCalculator.updateMinMax(BufferedImage b, int ndx)
          Updates min/max values based on the given BufferedImage.
protected  void MinMaxCalculator.updateMinMax(BufferedImage b, int ndx)
          Updates min/max values based on the given BufferedImage.
protected  void MinMaxCalculator.updateMinMax(byte[] b, int ndx)
          Updates min/max values based on the given byte array.
protected  void MinMaxCalculator.updateMinMax(byte[] b, int ndx)
          Updates min/max values based on the given byte array.
static void TiffTools.writeIFDValue(DataOutput ifdOut, ByteArrayOutputStream extraBuf, DataOutputStream extraOut, int offset, int tag, Object value)
          Writes the given IFD value to the given output object.
static void TiffTools.writeIFDValue(DataOutput ifdOut, ByteArrayOutputStream extraBuf, DataOutputStream extraOut, int offset, int tag, Object value)
          Writes the given IFD value to the given output object.
static long TiffTools.writeImage(BufferedImage img, Hashtable ifd, OutputStream out, int offset, boolean last)
          Writes the given field to the specified output stream using the given byte offset and IFD, in big-endian format.
static long TiffTools.writeImage(BufferedImage img, Hashtable ifd, OutputStream out, int offset, boolean last)
          Writes the given field to the specified output stream using the given byte offset and IFD, in big-endian format.
 

Uses of FormatException in loci.formats.codec
 

Methods in loci.formats.codec that throw FormatException
 byte[] Base64Codec.base64Decode(String s)
          Decodes a Base64 String by converting to bytes and passing to the decompress method.
 byte[] Base64Codec.base64Decode(String s)
          Decodes a Base64 String by converting to bytes and passing to the decompress method.
 byte[] BaseCodec.compress(byte[][] data, int x, int y, int[] dims, Object options)
          2D data block encoding default implementation.
 byte[] Codec.compress(byte[][] data, int x, int y, int[] dims, Object options)
          Compresses a block of data.
 byte[] BaseCodec.compress(byte[][] data, int x, int y, int[] dims, Object options)
          2D data block encoding default implementation.
 byte[] Codec.compress(byte[][] data, int x, int y, int[] dims, Object options)
          Compresses a block of data.
 byte[] AdobeDeflateCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of Adobe Deflate data.
 byte[] Base64Codec.compress(byte[] input, int x, int y, int[] dims, Object options)
          Encodes a block of data into Base64.
 byte[] Codec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of data.
 byte[] JPEGCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of JPEG data.
 byte[] LZOCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of lzo data.
 byte[] LZWCodec.compress(byte[] input, int x, int y, int[] dims, Object options)
          Compresses a block of data using LZW compression.
 byte[] LuraWaveCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
           
 byte[] MJPBCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
           
 byte[] MSRLECodec.compress(byte[] data, int x, int y, int[] dims, Object options)
           
 byte[] MSVideoCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
           
 byte[] NikonCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of Nikon data.
 byte[] PackbitsCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of Packbits data.
 byte[] QTRLECodec.compress(byte[] data, int x, int y, int[] dims, Object options)
           
 byte[] RPZACodec.compress(byte[] input, int x, int y, int[] dims, Object options)
           
 byte[] LuraWaveCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
           
 byte[] MJPBCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
           
 byte[] MSRLECodec.compress(byte[] data, int x, int y, int[] dims, Object options)
           
 byte[] MSVideoCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
           
 byte[] QTRLECodec.compress(byte[] data, int x, int y, int[] dims, Object options)
           
 byte[] RPZACodec.compress(byte[] input, int x, int y, int[] dims, Object options)
           
 byte[] AdobeDeflateCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of Adobe Deflate data.
 byte[] Base64Codec.compress(byte[] input, int x, int y, int[] dims, Object options)
          Encodes a block of data into Base64.
 byte[] Codec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of data.
 byte[] JPEGCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of JPEG data.
 byte[] LZOCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of lzo data.
 byte[] LZWCodec.compress(byte[] input, int x, int y, int[] dims, Object options)
          Compresses a block of data using LZW compression.
 byte[] NikonCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of Nikon data.
 byte[] PackbitsCodec.compress(byte[] data, int x, int y, int[] dims, Object options)
          Compresses a block of Packbits data.
 byte[] BaseCodec.decompress(byte[] data)
           
 byte[] Codec.decompress(byte[] data)
          Decompresses a block of data.
 byte[] BaseCodec.decompress(byte[] data)
           
 byte[] Codec.decompress(byte[] data)
          Decompresses a block of data.
 byte[] BaseCodec.decompress(byte[][] data)
           
 byte[] Codec.decompress(byte[][] data)
          Decompresses a block of data.
 byte[] BaseCodec.decompress(byte[][] data)
           
 byte[] Codec.decompress(byte[][] data)
          Decompresses a block of data.
 byte[] BaseCodec.decompress(byte[][] data, Object options)
          2D data block decoding default implementation.
 byte[] Codec.decompress(byte[][] data, Object options)
          Decompresses a block of data.
 byte[] BaseCodec.decompress(byte[][] data, Object options)
          2D data block decoding default implementation.
 byte[] Codec.decompress(byte[][] data, Object options)
          Decompresses a block of data.
 byte[] AdobeDeflateCodec.decompress(byte[] input, Object options)
          Decodes an Adobe Deflate (Zip) compressed image strip.
 byte[] Base64Codec.decompress(byte[] base64Data, Object options)
          Decompresses a block of data.
 byte[] Codec.decompress(byte[] data, Object options)
          Decompresses a block of data.
 byte[] JPEGCodec.decompress(byte[] input, Object options)
          Decodes an image strip using JPEG compression algorithm.
 byte[] LZOCodec.decompress(byte[] src, Object options)
          Decodes an LZO-compressed array.
 byte[] LZWCodec.decompress(byte[] input, Object options)
          Decodes an LZW-compressed data block.
 byte[] LuraWaveCodec.decompress(byte[] input, Object options)
           
 byte[] MJPBCodec.decompress(byte[] data, Object options)
           
 byte[] MSRLECodec.decompress(byte[] data, Object options)
           
 byte[] MSVideoCodec.decompress(byte[] data, Object options)
           
 byte[] NikonCodec.decompress(byte[] input, Object options)
          Decodes an image strip using Nikon's compression algorithm (a variant on Huffman coding).
 byte[] PackbitsCodec.decompress(byte[] input, Object options)
          Decodes a PackBits (Macintosh RLE) compressed image.
 byte[] QTRLECodec.decompress(byte[] data, Object options)
           
 byte[] RPZACodec.decompress(byte[] data, Object options)
           
 byte[] LuraWaveCodec.decompress(byte[] input, Object options)
           
 byte[] MJPBCodec.decompress(byte[] data, Object options)
           
 byte[] MSRLECodec.decompress(byte[] data, Object options)
           
 byte[] MSVideoCodec.decompress(byte[] data, Object options)
           
 byte[] QTRLECodec.decompress(byte[] data, Object options)
           
 byte[] RPZACodec.decompress(byte[] data, Object options)
           
 byte[] AdobeDeflateCodec.decompress(byte[] input, Object options)
          Decodes an Adobe Deflate (Zip) compressed image strip.
 byte[] Base64Codec.decompress(byte[] base64Data, Object options)
          Decompresses a block of data.
 byte[] Codec.decompress(byte[] data, Object options)
          Decompresses a block of data.
 byte[] JPEGCodec.decompress(byte[] input, Object options)
          Decodes an image strip using JPEG compression algorithm.
 byte[] LZOCodec.decompress(byte[] src, Object options)
          Decodes an LZO-compressed array.
 byte[] LZWCodec.decompress(byte[] input, Object options)
          Decodes an LZW-compressed data block.
 byte[] NikonCodec.decompress(byte[] input, Object options)
          Decodes an image strip using Nikon's compression algorithm (a variant on Huffman coding).
 byte[] PackbitsCodec.decompress(byte[] input, Object options)
          Decodes a PackBits (Macintosh RLE) compressed image.
static void Base64Codec.main(String[] args)
          Main testing method. test is inherited from parent class.
static void LZWCodec.main(String[] args)
          Main testing method.
static void Base64Codec.main(String[] args)
          Main testing method. test is inherited from parent class.
static void LZWCodec.main(String[] args)
          Main testing method.
 void BaseCodec.test()
          Main testing method default implementation.
 void BaseCodec.test()
          Main testing method default implementation.
 

Uses of FormatException in loci.formats.in
 

Methods in loci.formats.in that throw FormatException
 int ICSReader.fileGroupOption(String id)
           
 int LeicaReader.fileGroupOption(String id)
           
 int MetamorphReader.fileGroupOption(String id)
           
 int OIFReader.fileGroupOption(String id)
           
 int PerkinElmerReader.fileGroupOption(String id)
           
 int PrairieReader.fileGroupOption(String id)
           
 int ICSReader.fileGroupOption(String id)
           
 int LeicaReader.fileGroupOption(String id)
           
 int MetamorphReader.fileGroupOption(String id)
           
 int OIFReader.fileGroupOption(String id)
           
 int PerkinElmerReader.fileGroupOption(String id)
           
 int PrairieReader.fileGroupOption(String id)
           
 short[][] BaseTiffReader.get16BitLookupTable()
           
 short[][] LeicaReader.get16BitLookupTable()
           
 short[][] BaseTiffReader.get16BitLookupTable()
           
 short[][] LeicaReader.get16BitLookupTable()
           
 byte[][] AVIReader.get8BitLookupTable()
           
 byte[][] BMPReader.get8BitLookupTable()
           
 byte[][] BaseTiffReader.get8BitLookupTable()
           
 byte[][] GIFReader.get8BitLookupTable()
           
 byte[][] KhorosReader.get8BitLookupTable()
           
 byte[][] LeicaReader.get8BitLookupTable()
           
 byte[][] KhorosReader.get8BitLookupTable()
           
 byte[][] AVIReader.get8BitLookupTable()
           
 byte[][] BMPReader.get8BitLookupTable()
           
 byte[][] BaseTiffReader.get8BitLookupTable()
           
 byte[][] GIFReader.get8BitLookupTable()
           
 byte[][] LeicaReader.get8BitLookupTable()
           
 int SDTReader.getChannelCount(String id)
          Deprecated. Replaced by SDTReader.getChannelCount()
 int SDTReader.getChannelCount(String id)
          Deprecated. Replaced by SDTReader.getChannelCount()
 Dimension PictReader.getDimensions(byte[] stuff)
          Get the dimensions of a PICT file from the first 4 bytes after header.
 Dimension PictReader.getDimensions(byte[] stuff)
          Get the dimensions of a PICT file from the first 4 bytes after header.
 SDTInfo SDTReader.getInfo(String id)
          Deprecated. Replaced by SDTReader.getInfo()
 SDTInfo SDTReader.getInfo(String id)
          Deprecated. Replaced by SDTReader.getInfo()
 int[] BaseTiffReader.getTiffDimensions()
          Gets the dimensions of the given (possibly multi-page) TIFF file.
 int[] BaseTiffReader.getTiffDimensions()
          Gets the dimensions of the given (possibly multi-page) TIFF file.
 int SDTReader.getTimeBinCount(String id)
          Deprecated. Replaced by SDTReader.getTimeBinCount()
 int SDTReader.getTimeBinCount(String id)
          Deprecated. Replaced by SDTReader.getTimeBinCount()
protected  void AVIReader.initFile(String id)
           
protected  void AliconaReader.initFile(String id)
           
protected  void BMPReader.initFile(String id)
           
protected  void BaseTiffReader.initFile(String id)
           
protected  void BioRadReader.initFile(String id)
           
protected  void DeltavisionReader.initFile(String id)
           
protected  void DicomReader.initFile(String id)
           
protected  void EPSReader.initFile(String id)
           
protected  void FitsReader.initFile(String id)
           
protected  void GIFReader.initFile(String id)
           
protected  void GatanReader.initFile(String id)
           
protected  void ICSReader.initFile(String id)
           
protected  void IPLabReader.initFile(String id)
           
protected  void IPWReader.initFile(String id)
           
protected  void ImageIOReader.initFile(String id)
           
protected  void ImarisReader.initFile(String id)
           
protected  void ImarisTiffReader.initFile(String id)
           
protected  void KhorosReader.initFile(String id)
          Initialize the given file.
protected  void LIFReader.initFile(String id)
           
protected  void LIMReader.initFile(String id)
           
protected  void LegacyPictReader.initFile(String id)
           
protected  void LegacyQTReader.initFile(String id)
           
protected  void LegacyZVIReader.initFile(String id)
           
protected  void LeicaReader.initFile(String id)
           
protected  void MNGReader.initFile(String id)
           
 void MRCReader.initFile(String id)
           
protected  void MetamorphReader.initFile(String id)
           
 void MicromanagerReader.initFile(String id)
           
protected  void ND2Reader.initFile(String id)
           
protected  void NRRDReader.initFile(String id)
           
protected  void NikonReader.initFile(String id)
           
protected  void OIBReader.initFile(String id)
           
protected  void OIFReader.initFile(String id)
           
protected  void OMEXMLReader.initFile(String id)
           
protected  void OpenlabRawReader.initFile(String id)
           
protected  void OpenlabReader.initFile(String id)
           
protected  void PCIReader.initFile(String id)
           
protected  void PGMReader.initFile(String id)
           
protected  void PSDReader.initFile(String id)
           
protected  void PerkinElmerReader.initFile(String id)
           
protected  void PictReader.initFile(String id)
           
protected  void PrairieReader.initFile(String id)
           
protected  void QTReader.initFile(String id)
           
protected  void SDTReader.initFile(String id)
          Initializes the given SDT file.
protected  void SlidebookReader.initFile(String id)
           
protected  void VisitechReader.initFile(String id)
           
protected  void ZeissLSMReader.initFile(String id)
           
protected  void ZeissZVIReader.initFile(String id)
           
protected  void FitsReader.initFile(String id)
           
protected  void KhorosReader.initFile(String id)
          Initialize the given file.
protected  void LIMReader.initFile(String id)
           
protected  void NRRDReader.initFile(String id)
           
protected  void PCIReader.initFile(String id)
           
protected  void PGMReader.initFile(String id)
           
protected  void PSDReader.initFile(String id)
           
protected  void VisitechReader.initFile(String id)
           
protected  void AVIReader.initFile(String id)
           
protected  void AliconaReader.initFile(String id)
           
protected  void BMPReader.initFile(String id)
           
protected  void BaseTiffReader.initFile(String id)
           
protected  void BioRadReader.initFile(String id)
           
protected  void DeltavisionReader.initFile(String id)
           
protected  void DicomReader.initFile(String id)
           
protected  void EPSReader.initFile(String id)
           
protected  void GIFReader.initFile(String id)
           
protected  void GatanReader.initFile(String id)
           
protected  void ICSReader.initFile(String id)
           
protected  void IPLabReader.initFile(String id)
           
protected  void IPWReader.initFile(String id)
           
protected  void ImageIOReader.initFile(String id)
           
protected  void ImarisReader.initFile(String id)
           
protected  void ImarisTiffReader.initFile(String id)
           
protected  void LIFReader.initFile(String id)
           
protected  void LegacyPictReader.initFile(String id)
           
protected  void LegacyQTReader.initFile(String id)
           
protected  void LegacyZVIReader.initFile(String id)
           
protected  void LeicaReader.initFile(String id)
           
protected  void MNGReader.initFile(String id)
           
 void MRCReader.initFile(String id)
           
protected  void MetamorphReader.initFile(String id)
           
 void MicromanagerReader.initFile(String id)
           
protected  void ND2Reader.initFile(String id)
           
protected  void NikonReader.initFile(String id)
           
protected  void OIBReader.initFile(String id)
           
protected  void OIFReader.initFile(String id)
           
protected  void OMEXMLReader.initFile(String id)
           
protected  void OpenlabRawReader.initFile(String id)
           
protected  void OpenlabReader.initFile(String id)
           
protected  void PerkinElmerReader.initFile(String id)
           
protected  void PictReader.initFile(String id)
           
protected  void PrairieReader.initFile(String id)
           
protected  void QTReader.initFile(String id)
           
protected  void SDTReader.initFile(String id)
          Initializes the given SDT file.
protected  void SlidebookReader.initFile(String id)
           
protected  void ZeissLSMReader.initFile(String id)
           
protected  void ZeissZVIReader.initFile(String id)
           
protected  void BaseTiffReader.initMetadata()
          Populates the metadata hashtable and metadata store.
 void IPWReader.initMetadata()
           
protected  void LeicaReader.initMetadata()
           
protected  void BaseTiffReader.initMetadata()
          Populates the metadata hashtable and metadata store.
 void IPWReader.initMetadata()
           
protected  void LeicaReader.initMetadata()
           
protected  void BaseTiffReader.initStandardMetadata()
          Parses standard metadata.
protected  void FlexReader.initStandardMetadata()
           
protected  void FluoviewReader.initStandardMetadata()
           
protected  void GelReader.initStandardMetadata()
           
protected  void ImprovisionTiffReader.initStandardMetadata()
           
protected  void MetamorphReader.initStandardMetadata()
           
protected  void NikonReader.initStandardMetadata()
           
protected  void OMETiffReader.initStandardMetadata()
           
protected  void SEQReader.initStandardMetadata()
           
protected  void TCSReader.initStandardMetadata()
           
protected  void TiffReader.initStandardMetadata()
           
protected  void FlexReader.initStandardMetadata()
           
protected  void ImprovisionTiffReader.initStandardMetadata()
           
protected  void OMETiffReader.initStandardMetadata()
           
protected  void TCSReader.initStandardMetadata()
           
protected  void BaseTiffReader.initStandardMetadata()
          Parses standard metadata.
protected  void FluoviewReader.initStandardMetadata()
           
protected  void GelReader.initStandardMetadata()
           
protected  void MetamorphReader.initStandardMetadata()
           
protected  void NikonReader.initStandardMetadata()
           
protected  void SEQReader.initStandardMetadata()
           
protected  void TiffReader.initStandardMetadata()
           
 BufferedImage PictReader.open(byte[] pix)
          Open a PICT image from an array of bytes (used by OpenlabReader).
 BufferedImage PictReader.open(byte[] pix)
          Open a PICT image from an array of bytes (used by OpenlabReader).
 byte[] FluoviewReader.openBytes(int no)
           
 byte[] OpenlabReader.openBytes(int no)
           
 byte[] FluoviewReader.openBytes(int no)
           
 byte[] OpenlabReader.openBytes(int no)
           
 byte[] AVIReader.openBytes(int no, byte[] buf)
           
 byte[] AliconaReader.openBytes(int no, byte[] buf)
           
 byte[] BMPReader.openBytes(int no, byte[] buf)
           
 byte[] BaseTiffReader.openBytes(int no, byte[] buf)
           
 byte[] BioRadReader.openBytes(int no, byte[] buf)
           
 byte[] DeltavisionReader.openBytes(int no, byte[] buf)
           
 byte[] DicomReader.openBytes(int no, byte[] buf)
           
 byte[] EPSReader.openBytes(int no, byte[] buf)
           
 byte[] FitsReader.openBytes(int no, byte[] buf)
           
 byte[] FlexReader.openBytes(int no, byte[] buf)
           
 byte[] FluoviewReader.openBytes(int no, byte[] buf)
           
 byte[] GIFReader.openBytes(int no, byte[] buf)
           
 byte[] GatanReader.openBytes(int no, byte[] buf)
           
 byte[] ICSReader.openBytes(int no, byte[] buf)
           
 byte[] IPLabReader.openBytes(int no, byte[] buf)
           
 byte[] IPWReader.openBytes(int no, byte[] buf)
           
 byte[] ImageIOReader.openBytes(int no, byte[] buf)
           
 byte[] ImarisReader.openBytes(int no, byte[] buf)
           
 byte[] KhorosReader.openBytes(int no, byte[] buf)
           
 byte[] LIFReader.openBytes(int no, byte[] buf)
           
 byte[] LIMReader.openBytes(int no, byte[] buf)
           
 byte[] LegacyPictReader.openBytes(int no, byte[] buf)
           
 byte[] LegacyQTReader.openBytes(int no, byte[] buf)
           
 byte[] LegacyZVIReader.openBytes(int no, byte[] buf)
           
 byte[] LeicaReader.openBytes(int no, byte[] buf)
           
 byte[] MNGReader.openBytes(int no, byte[] buf)
           
 byte[] MRCReader.openBytes(int no, byte[] buf)
           
 byte[] MetamorphReader.openBytes(int no, byte[] buf)
           
 byte[] MicromanagerReader.openBytes(int no, byte[] buf)
           
 byte[] ND2Reader.openBytes(int no, byte[] buf)
           
 byte[] NRRDReader.openBytes(int no, byte[] buf)
           
 byte[] OIBReader.openBytes(int no, byte[] buf)
           
 byte[] OIFReader.openBytes(int no, byte[] buf)
           
 byte[] OMETiffReader.openBytes(int no, byte[] buf)
           
 byte[] OMEXMLReader.openBytes(int no, byte[] buf)
           
 byte[] OpenlabRawReader.openBytes(int no, byte[] buf)
           
 byte[] OpenlabReader.openBytes(int no, byte[] buf)
           
 byte[] PCIReader.openBytes(int no, byte[] buf)
           
 byte[] PGMReader.openBytes(int no, byte[] buf)
           
 byte[] PSDReader.openBytes(int no, byte[] buf)
           
 byte[] PerkinElmerReader.openBytes(int no, byte[] buf)
           
 byte[] PictReader.openBytes(int no, byte[] buf)
           
 byte[] PrairieReader.openBytes(int no, byte[] buf)
           
 byte[] QTReader.openBytes(int no, byte[] buf)
           
 byte[] SDTReader.openBytes(int no, byte[] buf)
           
 byte[] SlidebookReader.openBytes(int no, byte[] buf)
           
 byte[] VisitechReader.openBytes(int no, byte[] buf)
           
 byte[] ZeissLSMReader.openBytes(int no, byte[] buf)
           
 byte[] ZeissZVIReader.openBytes(int no, byte[] buf)
           
 byte[] FitsReader.openBytes(int no, byte[] buf)
           
 byte[] FlexReader.openBytes(int no, byte[] buf)
           
 byte[] KhorosReader.openBytes(int no, byte[] buf)
           
 byte[] LIMReader.openBytes(int no, byte[] buf)
           
 byte[] NRRDReader.openBytes(int no, byte[] buf)
           
 byte[] OMETiffReader.openBytes(int no, byte[] buf)
           
 byte[] PCIReader.openBytes(int no, byte[] buf)
           
 byte[] PGMReader.openBytes(int no, byte[] buf)
           
 byte[] PSDReader.openBytes(int no, byte[] buf)
           
 byte[] VisitechReader.openBytes(int no, byte[] buf)
           
 byte[] AVIReader.openBytes(int no, byte[] buf)
           
 byte[] AliconaReader.openBytes(int no, byte[] buf)
           
 byte[] BMPReader.openBytes(int no, byte[] buf)
           
 byte[] BaseTiffReader.openBytes(int no, byte[] buf)
           
 byte[] BioRadReader.openBytes(int no, byte[] buf)
           
 byte[] DeltavisionReader.openBytes(int no, byte[] buf)
           
 byte[] DicomReader.openBytes(int no, byte[] buf)
           
 byte[] EPSReader.openBytes(int no, byte[] buf)
           
 byte[] FluoviewReader.openBytes(int no, byte[] buf)
           
 byte[] GIFReader.openBytes(int no, byte[] buf)
           
 byte[] GatanReader.openBytes(int no, byte[] buf)
           
 byte[] ICSReader.openBytes(int no, byte[] buf)
           
 byte[] IPLabReader.openBytes(int no, byte[] buf)
           
 byte[] IPWReader.openBytes(int no, byte[] buf)
           
 byte[] ImageIOReader.openBytes(int no, byte[] buf)
           
 byte[] ImarisReader.openBytes(int no, byte[] buf)
           
 byte[] LIFReader.openBytes(int no, byte[] buf)
           
 byte[] LegacyPictReader.openBytes(int no, byte[] buf)
           
 byte[] LegacyQTReader.openBytes(int no, byte[] buf)
           
 byte[] LegacyZVIReader.openBytes(int no, byte[] buf)
           
 byte[] LeicaReader.openBytes(int no, byte[] buf)
           
 byte[] MNGReader.openBytes(int no, byte[] buf)
           
 byte[] MRCReader.openBytes(int no, byte[] buf)
           
 byte[] MetamorphReader.openBytes(int no, byte[] buf)
           
 byte[] MicromanagerReader.openBytes(int no, byte[] buf)
           
 byte[] ND2Reader.openBytes(int no, byte[] buf)
           
 byte[] OIBReader.openBytes(int no, byte[] buf)
           
 byte[] OIFReader.openBytes(int no, byte[] buf)
           
 byte[] OMEXMLReader.openBytes(int no, byte[] buf)
           
 byte[] OpenlabRawReader.openBytes(int no, byte[] buf)
           
 byte[] OpenlabReader.openBytes(int no, byte[] buf)
           
 byte[] PerkinElmerReader.openBytes(int no, byte[] buf)
           
 byte[] PictReader.openBytes(int no, byte[] buf)
           
 byte[] PrairieReader.openBytes(int no, byte[] buf)
           
 byte[] QTReader.openBytes(int no, byte[] buf)
           
 byte[] SDTReader.openBytes(int no, byte[] buf)
           
 byte[] SlidebookReader.openBytes(int no, byte[] buf)
           
 byte[] ZeissLSMReader.openBytes(int no, byte[] buf)
           
 byte[] ZeissZVIReader.openBytes(int no, byte[] buf)
           
 BufferedImage FluoviewReader.openImage(int no)
           
 BufferedImage ImageIOReader.openImage(int no)
           
 BufferedImage LegacyPictReader.openImage(int no)
           
 BufferedImage LegacyQTReader.openImage(int no)
           
 BufferedImage LegacyZVIReader.openImage(int no)
           
 BufferedImage MNGReader.openImage(int no)
           
 BufferedImage ND2Reader.openImage(int no)
           
 BufferedImage PictReader.openImage(int no)
           
 BufferedImage QTReader.openImage(int no)
           
 BufferedImage FluoviewReader.openImage(int no)
           
 BufferedImage ImageIOReader.openImage(int no)
           
 BufferedImage LegacyPictReader.openImage(int no)
           
 BufferedImage LegacyQTReader.openImage(int no)
           
 BufferedImage LegacyZVIReader.openImage(int no)
           
 BufferedImage MNGReader.openImage(int no)
           
 BufferedImage ND2Reader.openImage(int no)
           
 BufferedImage PictReader.openImage(int no)
           
 BufferedImage QTReader.openImage(int no)
           
 BufferedImage OIFReader.openThumbImage(int no)
           
 BufferedImage ZeissLSMReader.openThumbImage(int no)
           
 BufferedImage OIFReader.openThumbImage(int no)
           
 BufferedImage ZeissLSMReader.openThumbImage(int no)
           
static void MDBParser.parseDatabase(String filename, Hashtable h)
          Parses table structure for a specified MDB file.
static void MDBParser.parseDatabase(String filename, Hashtable h)
          Parses table structure for a specified MDB file.
protected  void IPWReader.parseDir(int depth, Object dir)
           
protected  void OIBReader.parseDir(int depth, Object dir)
           
protected  void ZeissZVIReader.parseDir(int depth, Object dir)
           
protected  void IPWReader.parseDir(int depth, Object dir)
           
protected  void OIBReader.parseDir(int depth, Object dir)
           
protected  void ZeissZVIReader.parseDir(int depth, Object dir)
           
protected  void ZeissLSMReader.parseSubBlocks(long data, String suffix, boolean little)
          Parses subblock-related fields.
protected  void ZeissLSMReader.parseSubBlocks(long data, String suffix, boolean little)
          Parses subblock-related fields.
protected  byte[] BaseTiffReader.swapIfRequired(byte[] byteArray)
          Examines a byte array to see if it needs to be byte swapped and modifies the byte array directly.
protected  byte[] BaseTiffReader.swapIfRequired(byte[] byteArray)
          Examines a byte array to see if it needs to be byte swapped and modifies the byte array directly.
 

Uses of FormatException in loci.formats.out
 

Methods in loci.formats.out that throw FormatException
 void AVIWriter.saveImage(Image image, boolean last)
           
 void EPSWriter.saveImage(Image image, boolean last)
           
 void ImageIOWriter.saveImage(Image image, boolean last)
           
 void JPEGWriter.saveImage(Image image, boolean last)
           
 void LegacyQTWriter.saveImage(Image image, boolean last)
           
 void QTWriter.saveImage(Image image, boolean last)
           
 void TiffWriter.saveImage(Image image, boolean last)
           
 void AVIWriter.saveImage(Image image, boolean last)
           
 void EPSWriter.saveImage(Image image, boolean last)
           
 void ImageIOWriter.saveImage(Image image, boolean last)
           
 void JPEGWriter.saveImage(Image image, boolean last)
           
 void LegacyQTWriter.saveImage(Image image, boolean last)
           
 void QTWriter.saveImage(Image image, boolean last)
           
 void TiffWriter.saveImage(Image image, boolean last)
           
 void TiffWriter.saveImage(Image image, Hashtable ifd, boolean last)
          Saves the given image to the specified (possibly already open) file.
 void TiffWriter.saveImage(Image image, Hashtable ifd, boolean last)
          Saves the given image to the specified (possibly already open) file.
 void TiffWriter.saveImage(Image image, Hashtable ifd, int series, boolean lastInSeries, boolean last)
          Saves the given image to the specified series in the current file.
 void TiffWriter.saveImage(Image image, Hashtable ifd, int series, boolean lastInSeries, boolean last)
          Saves the given image to the specified series in the current file.
 void TiffWriter.saveImage(Image image, int series, boolean lastInSeries, boolean last)
           
 void TiffWriter.saveImage(Image image, int series, boolean lastInSeries, boolean last)
           
 void TiffWriter.saveImage(String id, Image image, Hashtable ifd, boolean last)
          Deprecated. Replaced by TiffWriter.saveImage(Image, Hashtable, boolean)
 void TiffWriter.saveImage(String id, Image image, Hashtable ifd, boolean last)
          Deprecated. Replaced by TiffWriter.saveImage(Image, Hashtable, boolean)